Os04g0589500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0589500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.69 | 0.252 | 12.5 | 0.33 | 0.937 | 1.07 | -0.919 | 1.43 | 0.0724 | 22.6 | 28.67 | 155 | -- | -- |
| 31.15 | 0.26 | 12.5 | 0.604 | 0.934 | 1.13 | -0.72 | -- | 0.13 | 22.5 | 29.9 | 146 | -- | -- |
| 31.61 | 0.262 | 12.5 | 0.406 | 1 | 1.11 | -- | 1.21 | 0.0941 | 22.5 | 28.82 | 241 | -- | -- |
| 32.98 | 0.267 | 12.5 | 0.62 | 0.945 | 1.08 | -- | -- | 0.136 | 22.5 | 29.83 | 155 | -- | -- |
| 71.34 | 0.396 | 12.5 | 0.612 | -- | 1.58 | -- | 0.726 | 0.21 | -- | 28.82 | 241 | -- | -- |
| 46.64 | 0.32 | 12.6 | 0.324 | 1.09 | -- | -0.602 | -- | -0.0812 | 23.7 | -- | -- | -- | -- |
| 48.21 | 0.325 | 12.6 | 0.349 | 1.09 | -- | -- | -- | -0.0788 | 23.7 | -- | -- | -- | -- |
| 71.69 | 0.396 | 12.5 | 0.732 | -- | 1.58 | -- | -- | 0.23 | -- | 29.83 | 155 | -- | -- |
| 42.42 | 0.303 | 12.5 | -- | 0.979 | 0.905 | -- | -- | -0.0133 | 22.9 | 64.53 | 131 | -- | -- |
| 122.93 | 0.518 | 12.5 | 0.38 | -- | -- | -- | -- | -0.0657 | -- | -- | -- | -- | -- |
| 51.41 | 0.335 | 12.6 | -- | 1.09 | -- | -- | -- | -0.118 | 23.7 | -- | -- | -- | -- |
| 84.97 | 0.431 | 12.5 | -- | -- | 1.38 | -- | -- | 0.117 | -- | 29.83 | 155 | -- | -- |
| 126.73 | 0.525 | 12.5 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 28.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 3 | 28.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 29.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 9 | 29.12 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 13 | 29.17 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 17 | 29.20 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 44 | 29.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 52 | 29.54 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 67 | 29.64 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 75 | 29.65 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 156 | 29.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 184 | 30.01 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 226 | 30.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 239 | 30.12 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 240 | 30.12 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 253 | 30.15 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 258 | 30.16 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 261 | 30.16 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 319 | 30.27 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 343 | 30.30 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 359 | 30.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 365 | 30.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 366 | 30.34 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 368 | 30.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 400 | 30.38 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 450 | 30.45 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 455 | 30.45 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 501 | 30.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 530 | 30.51 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 543 | 30.52 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 554 | 30.53 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 617 | 30.56 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 727 | 30.61 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 757 | 30.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 794 | 30.62 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 795 | 30.63 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 842 | 30.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 866 | 30.65 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 913 | 30.67 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 942 | 30.69 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 960 | 30.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 980 | 30.70 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 988 | 30.71 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |