Os04g0588900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0588900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.89 | 0.47 | 9.36 | 0.705 | 1.29 | -1.43 | -0.813 | 0.873 | 0.379 | 10.1 | 14.62 | 344 | -- | -- |
| 100.67 | 0.467 | 9.37 | 0.624 | 1.3 | -1.33 | -0.79 | -- | 0.376 | 9.98 | 15.76 | 356 | -- | -- |
| 102.43 | 0.471 | 9.36 | 0.724 | 1.25 | -1.39 | -- | 1.21 | 0.388 | 9.91 | 12.11 | 408 | -- | -- |
| 103.22 | 0.473 | 9.38 | 0.559 | 1.3 | -1.29 | -- | -- | 0.351 | 10 | 16.2 | 332 | -- | -- |
| 168.2 | 0.604 | 9.34 | 1.08 | -- | -2.07 | -- | 1.64 | 0.551 | -- | 16.8 | 671 | -- | -- |
| 122.14 | 0.518 | 9.42 | 0.253 | 1.47 | -- | -0.717 | -- | 0.135 | 9.08 | -- | -- | -- | -- |
| 123.93 | 0.521 | 9.42 | 0.227 | 1.48 | -- | -- | -- | 0.135 | 9.05 | -- | -- | -- | -- |
| 170.91 | 0.609 | 9.38 | 0.756 | -- | -2.07 | -- | -- | 0.48 | -- | 16.3 | 662 | -- | -- |
| 109.63 | 0.488 | 9.4 | -- | 1.36 | -1.03 | -- | -- | 0.247 | 9.89 | 16.94 | 276 | -- | -- |
| 249.35 | 0.738 | 9.46 | 0.225 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 125.29 | 0.524 | 9.42 | -- | 1.48 | -- | -- | -- | 0.109 | 9.04 | -- | -- | -- | -- |
| 184.54 | 0.633 | 9.41 | -- | -- | -1.77 | -- | -- | 0.364 | -- | 16.9 | 645 | -- | -- |
| 250.68 | 0.739 | 9.46 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.55 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 2 | 97.71 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 3 | 97.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 5 | 97.75 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 9 | 97.77 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 13 | 97.87 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 18 | 98.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 21 | 98.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 27 | 98.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 71 | 98.68 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 95 | 98.88 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 114 | 99.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 137 | 99.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 168 | 99.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 193 | 99.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 209 | 99.53 | atmosphere | 995 | 43200 | < th | dose independent | sin | 23 | NA |
| 214 | 99.54 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 222 | 99.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 223 | 99.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 228 | 99.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 251 | 99.67 | atmosphere | 995 | 43200 | > th | dose independent | sin | 23 | NA |
| 254 | 99.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 256 | 99.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 264 | 99.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 286 | 99.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 287 | 99.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 309 | 99.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 323 | 99.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 332 | 99.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 333 | 99.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 348 | 99.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 351 | 99.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 371 | 100.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 375 | 100.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 402 | 100.09 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 418 | 100.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 428 | 100.16 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 22 | NA |
| 445 | 100.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 447 | 100.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 461 | 100.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 465 | 100.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 471 | 100.29 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 504 | 100.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 611 | 100.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 630 | 100.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 666 | 100.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 680 | 100.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 697 | 100.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 708 | 100.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 711 | 100.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 760 | 100.94 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 788 | 100.96 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 800 | 100.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 834 | 101.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 866 | 101.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 869 | 101.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 884 | 101.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 911 | 101.11 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |
| 928 | 101.14 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |