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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0588600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ABC transporter, transmembrane region, type 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0131) R2 : 0.000673
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0153 (0.0276) R2dN8 : 0.00087 R2N8 : 0.000673
σ : 0.247
deviance : 28.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.16 0.24 3.38 0.949 0.0857 -33.9 -0.103 -70.6 0.0235 12.4 15.01 773 -- --
27.46 0.246 2.93 -0.0288 0.0889 -0.016 -0.0788 -- 0.0134 12.4 15.01 773 -- --
26.2 0.238 3.38 0.946 0.0862 -33.9 -- -70.6 0.0233 12.6 15.01 773 -- --
27.2 0.243 2.92 0.0215 0.0687 -0.163 -- -- 0.0338 12.3 17.7 1056 -- --
26.67 0.241 3.38 0.941 -- -33.8 -- -70.4 0.0225 -- 15.03 773 -- --
27.46 0.246 2.93 -0.0295 0.0887 -- -0.0768 -- 0.0132 12.4 -- -- -- --
27.49 0.246 2.93 -0.0323 0.089 -- -- -- 0.0129 12.6 -- -- -- --
27.44 0.244 2.93 0.0189 -- -0.285 -- -- 0.0302 -- 16.9 995 -- --
27.16 0.243 2.92 -- 0.0677 -0.177 -- -- 0.0328 12.5 17.5 1051 -- --
27.98 0.247 2.93 -0.0355 -- -- -- -- 0.0114 -- -- -- -- --
27.51 0.245 2.93 -- 0.0895 -- -- -- 0.0165 12.6 -- -- -- --
27.44 0.244 2.93 -- -- -0.293 -- -- 0.0252 -- 16.81 1000 -- --
28.02 0.247 2.93 -- -- -- -- -- 0.0153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.40 temperature 20.0 10 < th dose independent rect. 11 1
7 22.40 humidity 90.0 90 > th dose independent rect. 10 1
9 22.40 precipitation 0.1 90 > th dose independent rect. 10 1
24 22.40 temperature 20.0 10 < th dose dependent rect. 11 1
30 22.40 humidity 90.0 90 > th dose dependent rect. 10 1
32 22.40 precipitation 0.1 90 > th dose dependent rect. 10 1
92 24.44 wind 1.0 30 < th dose independent rect. 10 1
93 24.44 temperature 10.0 1440 > th dose independent rect. 11 1
97 24.44 atmosphere 995.0 1440 > th dose independent rect. 11 1
100 24.44 precipitation 0.1 1440 < th dose independent rect. 11 1
101 24.44 temperature 10.0 1440 > th dose independent rect. 12 23
104 24.44 wind 1.0 30 < th dose dependent rect. 10 1
105 24.44 precipitation 0.1 1440 < th dose dependent rect. 11 1
107 24.52 humidity 70.0 30 < th dose independent rect. 10 1
108 24.52 temperature 25.0 30 > th dose dependent rect. 10 1
110 24.59 temperature 25.0 30 > th dose independent rect. 10 1
111 24.59 radiation 20.0 30 > th dose independent rect. 10 1
113 24.61 atmosphere 1005.0 30 > th dose independent rect. 10 1
114 24.61 atmosphere 1010.0 30 < th dose independent rect. 10 1
115 24.61 humidity 80.0 30 < th dose dependent rect. 10 1
117 24.62 atmosphere 1000.0 30 > th dose dependent rect. 10 1
120 24.64 radiation 40.0 30 < th dose independent rect. 10 1
123 24.65 wind 5.0 30 < th dose dependent rect. 10 1
128 24.67 temperature 30.0 30 < th dose independent rect. 10 1
132 24.68 humidity 60.0 30 > th dose independent rect. 10 1
137 24.69 temperature 10.0 30 > th dose independent rect. 10 1
144 24.69 precipitation 0.1 30 < th dose independent rect. 10 1
146 24.69 temperature 10.0 30 > th dose independent rect. 11 23
147 24.69 precipitation 0.1 30 < th dose dependent rect. 10 1
148 24.71 wind 1.0 30 > th dose independent rect. 10 1
150 24.74 radiation 1.0 30 > th dose dependent rect. 10 1
154 24.85 radiation 40.0 30 < th dose dependent rect. 10 1
156 24.92 atmosphere 1015.0 30 < th dose dependent rect. 10 1
157 24.93 humidity 50.0 30 > th dose dependent rect. 10 1
162 25.04 wind 1.0 30 > th dose dependent rect. 10 1
165 25.08 temperature 15.0 720 < th dose independent rect. 1 1
168 25.08 temperature 15.0 720 < th dose dependent rect. 1 1
298 25.53 atmosphere 1010.0 90 < th dose independent rect. 11 8
308 25.58 wind 9.0 30 < th dose independent rect. 11 23
326 25.70 temperature 15.0 720 > th dose independent sin 6 NA
337 25.74 atmosphere 1010.0 270 < th dose independent rect. 8 9
339 25.75 temperature 15.0 720 > th dose independent sin 8 NA
343 25.76 atmosphere 1010.0 90 < th dose independent rect. 8 11
358 25.81 temperature 15.0 720 < th dose independent sin 6 NA
361 25.81 temperature 15.0 720 < th dose dependent sin 4 NA
427 25.91 atmosphere 1005.0 30 > th dose dependent rect. 10 11
447 25.93 atmosphere 1005.0 30 > th dose dependent rect. 10 13
449 25.94 atmosphere 1010.0 270 < th dose independent sin 0 NA
460 25.97 atmosphere 1010.0 90 < th dose independent rect. 21 22
465 25.98 atmosphere 1010.0 270 > th dose independent rect. 8 4
492 26.00 atmosphere 1010.0 270 < th dose independent rect. 21 20
512 26.02 atmosphere 1010.0 90 < th dose independent rect. 4 15
514 26.02 atmosphere 1010.0 90 < th dose independent rect. 23 20
533 26.03 temperature 25.0 90 > th dose dependent rect. 19 2
552 26.04 atmosphere 1010.0 270 < th dose independent rect. 23 17
565 26.05 temperature 25.0 30 > th dose independent rect. 11 8
568 26.05 precipitation 0.1 30 < th dose independent rect. 11 23
573 26.05 precipitation 0.1 30 < th dose dependent rect. 11 23
595 26.07 temperature 25.0 90 > th dose dependent rect. 19 4
618 26.08 temperature 20.0 30 > th dose dependent rect. 11 8
624 26.09 atmosphere 1010.0 720 > th dose independent rect. 1 1
657 26.10 atmosphere 995.0 30 > th dose independent rect. 11 23
719 26.15 atmosphere 1015.0 4320 < th dose independent rect. 15 1
731 26.16 humidity 70.0 4320 > th dose independent rect. 21 1
745 26.17 atmosphere 1010.0 270 > th dose independent sin 0 NA
763 26.18 temperature 25.0 90 > th dose independent rect. 19 2
809 26.20 atmosphere 1015.0 4320 > th dose independent rect. 15 1
816 26.20 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
832 26.21 atmosphere 1010.0 30 < th dose independent rect. 11 23
846 26.22 temperature 15.0 720 > th dose independent rect. 21 8
859 26.22 temperature 25.0 90 > th dose dependent rect. 19 7
1000 26.26 atmosphere 1005.0 30 > th dose dependent rect. 10 8