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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0588500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0396) R2 : 0.511
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.03 (0.0979) R2dC : 0.468 R2C : 0.427
β3 : 4.75 (0.658) R2dE : 0.0567 R2E : 0.0216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.384 (0.0833) R2dN8 : 0.0304 R2N8 : 0.0163
σ : 0.743
deviance : 254.16
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_____
C
peak time of C : 21.4
E
wheather : temperature
threshold : 19.3
memory length : 99
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.98
open length of G : 0.783

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.73 0.748 4.22 -0.0101 2.03 7.54 -0.7 -24.4 0.397 21.4 20.02 30 6.01 2.01
260.08 0.751 4.24 0.0501 2.02 2.89 -0.411 -- 0.439 21.3 20.47 70 5.77 2.22
255.22 0.744 4.23 0.0327 2.05 7.22 -- -22.4 0.395 21.4 20.03 31 6.02 2.01
255.18 0.744 4.2 0.11 1.94 4.64 -- -- 0.339 21.4 19.3 99 5.97 0.785
494.06 1.04 4.17 -0.00776 -- 5.77 -- -21.3 0.368 -- 19.89 36 6.88 2.26
282.67 0.788 4.23 -0.0421 1.96 -- -0.382 -- 0.353 21.5 -- -- -- --
283.21 0.788 4.23 -0.0279 1.96 -- -- -- 0.353 21.5 -- -- -- --
494.06 1.04 4.17 0.0498 -- 3.86 -- -- 0.368 -- 19.21 77 6.2 0.716
254.16 0.743 4.22 -- 2.03 4.75 -- -- 0.384 21.4 19.3 99 5.98 0.783
509.4 1.05 4.17 -0.0141 -- -- -- -- 0.348 -- -- -- -- --
283.23 0.787 4.23 -- 1.96 -- -- -- 0.356 21.5 -- -- -- --
494.13 1.04 4.17 -- -- 3.84 -- -- 0.363 -- 19.22 91 6.26 1.03
509.4 1.05 4.17 -- -- -- -- -- 0.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.16 temperature 20.0 30 < th dose dependent rect. 6 2
3 255.64 temperature 20.0 30 < th dose independent rect. 6 2
17 258.49 radiation 1.0 30 < th dose dependent rect. 6 2
29 262.21 temperature 20.0 270 > th dose independent rect. 23 13
31 262.93 humidity 90.0 90 > th dose dependent rect. 5 3
36 263.06 temperature 20.0 270 < th dose independent rect. 2 15
37 263.07 temperature 15.0 4320 > th dose independent rect. 11 3
40 263.10 temperature 25.0 30 < th dose dependent rect. 4 6
47 263.21 humidity 90.0 90 > th dose dependent rect. 5 6
82 264.15 temperature 20.0 270 > th dose independent sin 4 NA
86 264.25 temperature 20.0 270 < th dose independent sin 4 NA
89 264.26 atmosphere 1005.0 43200 > th dose independent rect. 11 1
99 264.48 wind 9.0 4320 < th dose independent rect. 5 7
104 264.54 humidity 80.0 4320 > th dose independent rect. 10 1
107 264.55 humidity 90.0 90 > th dose dependent rect. 5 12
110 264.60 humidity 80.0 4320 < th dose independent rect. 10 1
118 264.81 humidity 90.0 90 > th dose dependent rect. 5 10
125 264.91 temperature 15.0 4320 > th dose independent rect. 7 7
129 264.92 wind 9.0 4320 > th dose dependent rect. 5 8
131 264.95 temperature 15.0 4320 > th dose independent rect. 9 5
134 264.98 atmosphere 1005.0 43200 < th dose independent rect. 11 1
143 265.17 humidity 90.0 90 > th dose independent rect. 5 3
157 265.33 radiation 1.0 90 < th dose independent rect. 5 3
160 265.36 humidity 90.0 4320 > th dose independent rect. 9 5
162 265.39 wind 9.0 4320 > th dose independent rect. 5 7
177 265.52 humidity 80.0 4320 > th dose dependent rect. 10 1
178 265.53 atmosphere 1005.0 43200 < th dose independent rect. 22 2
190 265.69 humidity 90.0 4320 > th dose dependent rect. 9 5
191 265.69 wind 9.0 4320 > th dose dependent rect. 1 12
205 265.85 humidity 90.0 90 > th dose independent rect. 4 7
214 265.91 humidity 90.0 4320 < th dose independent rect. 9 5
229 266.07 wind 9.0 4320 > th dose independent rect. 4 9
239 266.17 humidity 90.0 4320 > th dose independent rect. 9 3
251 266.23 wind 9.0 14400 < th dose independent rect. 23 13
256 266.27 humidity 90.0 4320 > th dose independent rect. 8 9
258 266.28 humidity 90.0 4320 > th dose dependent rect. 8 9
264 266.33 wind 9.0 4320 > th dose independent rect. 1 12
297 266.54 humidity 90.0 4320 < th dose independent rect. 9 3
324 266.64 temperature 15.0 30 > th dose dependent rect. 1 12
385 266.93 radiation 40.0 4320 > th dose independent rect. 9 1
448 267.24 temperature 10.0 720 > th dose dependent rect. 1 1
500 267.48 humidity 90.0 10 > th dose independent rect. 5 9
511 267.51 wind 3.0 90 < th dose dependent rect. 12 1
517 267.54 wind 1.0 720 < th dose independent rect. 4 1
529 267.59 wind 9.0 4320 < th dose independent rect. 10 2
531 267.59 temperature 15.0 4320 < th dose dependent rect. 11 2
534 267.61 temperature 15.0 4320 < th dose dependent rect. 10 7
536 267.62 wind 9.0 4320 > th dose dependent rect. 9 4
547 267.67 temperature 15.0 4320 < th dose independent rect. 10 1
577 267.75 precipitation 0.1 4320 < th dose independent rect. 14 2
579 267.75 precipitation 0.1 4320 < th dose dependent rect. 14 2
584 267.77 atmosphere 1005.0 43200 < th dose independent rect. 21 7
598 267.84 atmosphere 1005.0 43200 > th dose independent rect. 22 1
616 267.90 radiation 40.0 4320 < th dose independent rect. 9 1
619 267.90 temperature 20.0 270 > th dose independent rect. 4 8
637 268.02 precipitation 0.1 4320 > th dose independent rect. 14 2
638 268.02 precipitation 0.1 4320 > th dose dependent rect. 14 2
643 268.05 radiation 40.0 4320 > th dose independent rect. 15 19
646 268.06 temperature 15.0 4320 < th dose independent rect. 10 7
648 268.08 wind 9.0 4320 > th dose independent rect. 10 2
666 268.13 atmosphere 1005.0 90 < th dose independent rect. 5 4
695 268.23 wind 1.0 14400 > th dose dependent rect. 3 2
706 268.26 wind 5.0 1440 > th dose dependent rect. 17 7
709 268.27 wind 1.0 720 < th dose dependent rect. 4 1
715 268.28 temperature 20.0 270 > th dose independent rect. 6 12
729 268.32 humidity 90.0 4320 < th dose independent rect. 8 9
755 268.35 wind 9.0 14400 < th dose dependent rect. 3 2
777 268.39 atmosphere 1005.0 43200 > th dose independent rect. 3 2
778 268.39 wind 5.0 4320 > th dose independent rect. 20 5
780 268.40 temperature 20.0 720 > th dose independent rect. 1 1
781 268.40 atmosphere 1005.0 43200 < th dose independent rect. 3 1
802 268.46 wind 9.0 14400 < th dose independent sin 6 NA
817 268.51 temperature 10.0 720 > th dose dependent rect. 23 4
830 268.54 humidity 90.0 4320 > th dose independent rect. 16 1
845 268.56 humidity 80.0 720 > th dose independent rect. 23 3
855 268.57 wind 5.0 4320 > th dose independent rect. 20 3
866 268.58 wind 5.0 4320 < th dose independent rect. 20 3
876 268.60 humidity 80.0 720 > th dose independent rect. 1 1
884 268.61 radiation 20.0 30 < th dose dependent rect. 5 10
886 268.62 wind 7.0 1440 < th dose independent rect. 17 17
906 268.67 temperature 25.0 30 < th dose independent rect. 16 12
917 268.69 atmosphere 1005.0 43200 > th dose independent rect. 22 7
944 268.73 wind 5.0 4320 < th dose independent rect. 20 5
961 268.76 temperature 30.0 10 < th dose dependent rect. 5 10
994 268.86 precipitation 0.1 1440 > th dose independent rect. 10 1
997 268.86 precipitation 0.1 1440 > th dose dependent rect. 10 1