FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0588200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.013) R2 : 0.0397
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.0274) R2dN8 : 0.0512 R2N8 : 0.0397
σ : 0.245
deviance : 27.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.17 0.245 2.85 0.0785 0.0199 -0.0379 -0.0318 0.248 0.158 16.9 24.8 20 -- --
27.34 0.245 2.85 0.00942 0.0288 -0.0489 0.115 -- 0.145 15.4 25 22 -- --
27.17 0.243 2.85 0.0764 0.0205 -0.0388 -- 0.24 0.158 17.1 24.8 20 -- --
27.38 0.245 2.85 0.011 0.03 -0.0464 -- -- 0.144 16.6 25 22 -- --
27.19 0.243 2.85 0.0739 -- -0.0314 -- 0.242 0.154 -- 24.74 20 -- --
27.5 0.246 2.86 -0.00186 0.0107 -- -0.0915 -- 0.118 0.811 -- -- -- --
27.53 0.246 2.86 0.00178 0.0154 -- -- -- 0.119 21.7 -- -- -- --
27.42 0.245 2.85 0.00809 -- -0.0362 -- -- 0.138 -- 25 22 -- --
27.38 0.245 2.85 -- 0.0293 -0.0456 -- -- 0.143 16.6 25 22 -- --
27.54 0.245 2.86 0.00192 -- -- -- -- 0.119 -- -- -- -- --
27.53 0.245 2.86 -- 0.0154 -- -- -- 0.119 21.7 -- -- -- --
27.42 0.245 2.85 -- -- -0.0358 -- -- 0.137 -- 25 22 -- --
27.54 0.245 2.86 -- -- -- -- -- 0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.26 wind 3.0 30 < th dose independent rect. 2 1
5 26.26 temperature 10.0 30 > th dose independent rect. 2 1
7 26.26 temperature 30.0 30 < th dose independent rect. 2 1
8 26.26 humidity 50.0 30 > th dose independent rect. 2 1
11 26.26 atmosphere 995.0 30 > th dose independent rect. 2 1
12 26.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
14 26.26 radiation 1.0 30 < th dose independent rect. 2 1
19 26.26 precipitation 0.1 30 < th dose independent rect. 2 1
20 26.26 temperature 10.0 30 > th dose independent rect. 3 23
21 26.26 wind 3.0 30 < th dose dependent rect. 2 1
25 26.26 temperature 10.0 30 > th dose dependent rect. 2 1
27 26.26 humidity 50.0 30 > th dose dependent rect. 2 1
29 26.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
30 26.26 radiation 1.0 30 < th dose dependent rect. 2 1
35 26.26 precipitation 0.1 30 < th dose dependent rect. 2 1
39 26.27 atmosphere 1005.0 30 > th dose independent rect. 2 1
41 26.27 temperature 30.0 30 < th dose dependent rect. 2 1
44 26.27 atmosphere 995.0 30 > th dose dependent rect. 2 1
53 26.29 wind 9.0 30 < th dose independent rect. 3 23
59 26.30 wind 1.0 30 > th dose independent rect. 2 1
107 26.45 temperature 25.0 10 > th dose independent rect. 22 1
109 26.45 temperature 20.0 30 > th dose dependent rect. 22 1
110 26.46 wind 9.0 1440 < th dose independent rect. 23 1
112 26.46 temperature 10.0 1440 > th dose independent rect. 23 1
115 26.46 temperature 30.0 1440 < th dose independent rect. 23 1
119 26.46 humidity 50.0 1440 > th dose independent rect. 23 1
129 26.46 atmosphere 995.0 1440 > th dose independent rect. 23 1
130 26.46 radiation 1.0 1440 < th dose independent rect. 23 1
150 26.46 temperature 10.0 1440 > th dose independent rect. 24 23
154 26.46 atmosphere 1005.0 30 > th dose dependent rect. 22 1
155 26.46 radiation 1.0 1440 < th dose dependent rect. 23 1
160 26.47 wind 1.0 30 > th dose independent rect. 22 1
161 26.47 wind 3.0 30 < th dose independent rect. 22 1
163 26.47 humidity 80.0 30 > th dose independent rect. 22 1
164 26.47 atmosphere 1005.0 30 > th dose independent rect. 22 1
165 26.47 wind 9.0 720 < th dose independent rect. 3 8
168 26.47 atmosphere 995.0 30 > th dose dependent rect. 22 1
175 26.48 temperature 10.0 30 > th dose independent rect. 22 1
177 26.48 temperature 30.0 30 < th dose independent rect. 22 1
178 26.48 humidity 50.0 30 > th dose independent rect. 22 1
181 26.48 humidity 90.0 30 < th dose independent rect. 22 1
182 26.48 atmosphere 995.0 30 > th dose independent rect. 22 1
184 26.48 atmosphere 1010.0 30 < th dose independent rect. 22 1
186 26.48 radiation 1.0 30 < th dose independent rect. 22 1
191 26.48 precipitation 0.1 30 < th dose independent rect. 22 1
192 26.48 temperature 15.0 720 > th dose independent rect. 3 8
193 26.48 temperature 10.0 30 > th dose independent rect. 23 23
194 26.48 wind 1.0 30 > th dose dependent rect. 22 1
195 26.48 wind 5.0 30 < th dose dependent rect. 22 1
199 26.48 humidity 50.0 30 > th dose dependent rect. 22 1
202 26.48 radiation 1.0 30 < th dose dependent rect. 22 1
208 26.48 precipitation 0.1 30 < th dose dependent rect. 22 1
210 26.50 atmosphere 1015.0 720 < th dose independent rect. 3 8
211 26.50 wind 9.0 30 < th dose independent rect. 23 23
213 26.50 humidity 90.0 30 < th dose dependent rect. 22 1
215 26.50 atmosphere 1015.0 30 < th dose dependent rect. 22 1
220 26.52 atmosphere 995.0 720 > th dose independent rect. 3 8
221 26.52 temperature 10.0 720 > th dose independent rect. 11 16
223 26.53 temperature 30.0 30 < th dose dependent rect. 22 1
228 26.54 temperature 15.0 720 > th dose independent rect. 23 16
257 26.57 humidity 50.0 720 > th dose independent rect. 3 8
266 26.58 temperature 10.0 720 > th dose independent rect. 15 8
278 26.61 radiation 40.0 720 < th dose independent rect. 15 8
282 26.64 wind 9.0 720 < th dose independent rect. 15 8
284 26.65 atmosphere 995.0 30 > th dose independent rect. 3 23
293 26.71 atmosphere 1015.0 30 < th dose independent rect. 3 23
294 26.71 precipitation 0.1 30 < th dose independent rect. 3 23
295 26.71 precipitation 0.1 30 < th dose dependent rect. 3 23
303 26.74 wind 5.0 90 < th dose independent rect. 17 10
305 26.75 precipitation 0.1 720 < th dose independent rect. 3 8
306 26.75 temperature 30.0 90 < th dose independent rect. 17 10
307 26.75 humidity 60.0 90 > th dose independent rect. 17 10
309 26.75 wind 9.0 720 < th dose independent rect. 11 16
310 26.75 atmosphere 995.0 720 > th dose independent rect. 23 16
313 26.75 atmosphere 1000.0 90 > th dose dependent rect. 3 6
314 26.75 precipitation 0.1 720 < th dose dependent rect. 3 8
315 26.76 wind 9.0 4320 < th dose independent rect. 3 1
316 26.76 atmosphere 1005.0 10 > th dose dependent rect. 4 5
319 26.78 precipitation 0.1 720 < th dose independent rect. 15 8
320 26.78 wind 9.0 720 < th dose independent rect. 23 16
321 26.78 atmosphere 1015.0 720 < th dose independent rect. 23 16
322 26.78 radiation 1.0 90 < th dose independent rect. 6 21
323 26.78 atmosphere 995.0 30 > th dose independent rect. 23 23
325 26.78 precipitation 0.1 720 < th dose dependent rect. 15 8
326 26.79 temperature 25.0 10 > th dose independent rect. 24 9
327 26.79 temperature 20.0 90 > th dose independent rect. 3 14
328 26.79 wind 1.0 10 > th dose independent rect. 14 17
330 26.79 radiation 10.0 10 < th dose independent rect. 3 23
334 26.79 atmosphere 995.0 90 > th dose dependent rect. 17 10
338 26.80 atmosphere 995.0 90 > th dose independent rect. 3 14
342 26.80 radiation 20.0 90 < th dose dependent rect. 17 10
343 26.80 radiation 1.0 90 < th dose dependent rect. 6 21
345 26.81 precipitation 0.1 720 < th dose independent rect. 11 16
349 26.81 precipitation 0.1 720 < th dose dependent rect. 11 16
351 26.82 precipitation 0.1 90 < th dose independent rect. 17 10
352 26.82 wind 9.0 90 < th dose independent rect. 3 14
353 26.82 atmosphere 1005.0 270 > th dose dependent rect. 4 1
355 26.82 temperature 20.0 90 > th dose dependent rect. 3 6
357 26.82 wind 9.0 90 < th dose dependent rect. 17 10
359 26.82 precipitation 0.1 90 < th dose dependent rect. 17 10
361 26.83 temperature 10.0 1440 > th dose independent rect. 3 1
364 26.83 temperature 30.0 1440 < th dose independent rect. 3 1
368 26.83 humidity 50.0 1440 > th dose independent rect. 3 1
377 26.83 atmosphere 995.0 1440 > th dose independent rect. 3 1
378 26.83 radiation 1.0 1440 < th dose independent rect. 3 1
400 26.83 precipitation 0.1 720 < th dose independent rect. 23 16
401 26.83 temperature 10.0 1440 > th dose independent rect. 4 23
404 26.83 atmosphere 1015.0 30 < th dose independent rect. 23 23
405 26.83 radiation 1.0 1440 < th dose dependent rect. 3 1
425 26.83 temperature 10.0 90 > th dose dependent rect. 3 14
426 26.83 precipitation 0.1 720 < th dose dependent rect. 23 16
427 26.84 temperature 10.0 90 > th dose independent rect. 17 10
428 26.84 radiation 20.0 90 < th dose independent rect. 17 10
433 26.84 atmosphere 1015.0 90 < th dose independent rect. 3 14
436 26.84 precipitation 0.1 30 < th dose independent rect. 23 23
439 26.84 precipitation 0.1 30 < th dose dependent rect. 23 23
441 26.85 temperature 20.0 90 > th dose independent rect. 3 6
444 26.85 precipitation 0.1 90 < th dose independent rect. 3 14
445 26.85 temperature 25.0 10 > th dose independent rect. 24 18
454 26.85 radiation 10.0 90 < th dose dependent rect. 15 12
455 26.85 precipitation 0.1 90 < th dose dependent rect. 3 14
457 26.86 humidity 70.0 10 > th dose independent rect. 18 10
459 26.86 atmosphere 995.0 720 > th dose independent rect. 11 16
461 26.86 temperature 25.0 10 > th dose independent rect. 24 21
469 26.86 atmosphere 995.0 10 > th dose dependent rect. 18 10
472 26.87 atmosphere 1005.0 90 > th dose independent rect. 3 6
486 26.88 temperature 25.0 10 > th dose independent rect. 24 7
487 26.88 atmosphere 995.0 720 > th dose independent rect. 15 8
488 26.88 atmosphere 995.0 90 > th dose independent rect. 17 10
491 26.88 wind 1.0 10 > th dose independent rect. 23 23
494 26.88 humidity 50.0 90 > th dose dependent rect. 17 10
498 26.89 precipitation 0.1 1440 < th dose independent rect. 23 1
502 26.89 radiation 1.0 90 < th dose independent rect. 10 17
505 26.89 radiation 10.0 10 < th dose independent rect. 23 23
506 26.89 precipitation 0.1 1440 < th dose dependent rect. 23 1
515 26.89 radiation 20.0 10 < th dose dependent rect. 3 23
518 26.90 radiation 1.0 90 < th dose independent rect. 13 14
534 26.91 atmosphere 1005.0 10 > th dose independent rect. 4 5
539 26.91 atmosphere 1005.0 90 > th dose independent rect. 17 10
542 26.91 radiation 1.0 90 < th dose independent rect. 15 12
544 26.91 humidity 50.0 90 > th dose independent rect. 3 14
555 26.91 temperature 10.0 90 > th dose dependent rect. 3 18
561 26.92 temperature 25.0 10 > th dose independent rect. 3 6
596 26.93 wind 1.0 90 > th dose independent rect. 9 14
598 26.93 temperature 25.0 10 > th dose independent rect. 4 14
607 26.93 humidity 50.0 30 > th dose independent rect. 3 23
618 26.93 radiation 1.0 10 < th dose dependent rect. 13 15
626 26.94 atmosphere 1015.0 90 < th dose independent rect. 17 10
627 26.94 radiation 10.0 10 < th dose independent rect. 4 13
636 26.94 temperature 15.0 90 > th dose dependent rect. 21 6
640 26.94 radiation 1.0 10 < th dose dependent rect. 17 11
657 26.95 atmosphere 1015.0 1440 < th dose independent rect. 3 1
667 26.95 humidity 70.0 90 > th dose independent rect. 11 16
669 26.95 temperature 20.0 90 > th dose independent rect. 3 18
675 26.95 atmosphere 1000.0 10 > th dose dependent rect. 4 3
707 26.96 humidity 70.0 90 > th dose independent rect. 3 6
708 26.96 radiation 30.0 90 < th dose independent rect. 3 6
711 26.96 temperature 10.0 1440 > th dose independent rect. 19 9
714 26.96 temperature 30.0 1440 < th dose independent rect. 19 9
718 26.96 humidity 50.0 1440 > th dose independent rect. 19 9
720 26.96 atmosphere 995.0 1440 > th dose independent rect. 19 9
721 26.96 radiation 1.0 1440 < th dose independent rect. 19 9
742 26.96 precipitation 0.1 90 < th dose independent rect. 9 14
745 26.96 temperature 10.0 1440 > th dose independent rect. 4 15
749 26.96 atmosphere 995.0 10 > th dose independent rect. 14 17
752 26.96 radiation 40.0 90 < th dose independent rect. 9 18
753 26.96 precipitation 0.1 90 < th dose independent rect. 9 18
770 26.96 radiation 1.0 1440 < th dose dependent rect. 19 9
781 26.96 precipitation 0.1 90 < th dose dependent rect. 9 14
790 26.96 precipitation 0.1 90 < th dose dependent rect. 9 18
793 26.96 temperature 10.0 30 > th dose dependent rect. 3 23
798 26.97 wind 9.0 4320 < th dose independent rect. 4 4
799 26.97 wind 7.0 90 < th dose independent rect. 3 6
801 26.97 temperature 10.0 90 > th dose independent rect. 3 6
803 26.97 temperature 30.0 90 < th dose independent rect. 3 6
804 26.97 humidity 50.0 90 > th dose independent rect. 3 6
808 26.97 atmosphere 1015.0 90 < th dose independent rect. 3 6
809 26.97 precipitation 0.1 90 < th dose independent rect. 3 6
815 26.97 atmosphere 1015.0 90 < th dose independent rect. 23 10
825 26.97 temperature 25.0 10 > th dose independent rect. 4 17
831 26.97 temperature 10.0 90 > th dose independent rect. 9 18
854 26.97 precipitation 0.1 90 < th dose dependent rect. 3 6
891 26.98 temperature 25.0 10 > th dose independent rect. 4 3
908 26.98 wind 9.0 90 < th dose independent rect. 23 10
909 26.98 temperature 10.0 90 > th dose independent rect. 23 10
911 26.98 temperature 30.0 90 < th dose independent rect. 23 10
914 26.98 humidity 50.0 90 > th dose independent rect. 23 10
917 26.98 atmosphere 995.0 90 > th dose independent rect. 23 10
919 26.98 radiation 30.0 90 < th dose independent rect. 23 10
931 26.98 temperature 10.0 90 > th dose independent rect. 9 14
938 26.98 radiation 40.0 30 < th dose independent rect. 14 17
939 26.98 wind 9.0 90 < th dose independent rect. 9 18
975 26.99 temperature 20.0 90 > th dose independent rect. 3 4
976 26.99 temperature 10.0 43200 > th dose independent rect. 10 5
977 26.99 wind 1.0 30 > th dose independent rect. 7 7
978 26.99 temperature 10.0 1440 > th dose independent rect. 8 7
981 26.99 precipitation 0.1 30 < th dose independent rect. 7 7
985 26.99 precipitation 0.1 90 < th dose independent rect. 23 10
987 26.99 humidity 50.0 720 > th dose independent rect. 15 12
995 26.99 humidity 50.0 720 > th dose independent rect. 23 16
997 26.99 temperature 10.0 1440 > th dose independent rect. 15 17