Os04g0586500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0586500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.21 | 0.536 | 9.17 | 2.05 | 0.795 | 1.49 | -2.2 | -1.23 | 0.2 | 8.31 | 7.151 | 702 | -- | -- |
| 130.16 | 0.531 | 9.18 | 2.07 | 0.777 | 1.81 | -2.12 | -- | 0.209 | 8.28 | 7.477 | 699 | -- | -- |
| 143.34 | 0.558 | 9.18 | 1.96 | 0.736 | 1.67 | -- | 0.0719 | 0.189 | 7.95 | 8 | 701 | -- | -- |
| 143.34 | 0.558 | 9.18 | 1.94 | 0.75 | 1.64 | -- | -- | 0.197 | 7.95 | 8.006 | 708 | -- | -- |
| 172.09 | 0.611 | 9.21 | 1.95 | -- | 1.33 | -- | 0.979 | 0.197 | -- | 8.5 | 1103 | -- | -- |
| 146.95 | 0.568 | 9.2 | 1.81 | 0.666 | -- | -1.79 | -- | 0.115 | 8.16 | -- | -- | -- | -- |
| 156.49 | 0.586 | 9.2 | 1.75 | 0.676 | -- | -- | -- | 0.115 | 7.8 | -- | -- | -- | -- |
| 172.31 | 0.611 | 9.21 | 1.89 | -- | 1.12 | -- | -- | 0.178 | -- | 8.408 | 1103 | -- | -- |
| 235.45 | 0.715 | 9.24 | -- | 0.713 | 0.654 | -- | -- | -0.0631 | 7.67 | 8.929 | 701 | -- | -- |
| 181.27 | 0.629 | 9.22 | 1.76 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 237.41 | 0.721 | 9.25 | -- | 0.69 | -- | -- | -- | -0.0802 | 7.63 | -- | -- | -- | -- |
| 260.89 | 0.752 | 9.26 | -- | -- | 0.513 | -- | -- | -0.0617 | -- | 10.6 | 886 | -- | -- |
| 263 | 0.757 | 9.26 | -- | -- | -- | -- | -- | -0.0709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.88 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 6 |
| 2 | 126.31 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 15 |
| 3 | 127.25 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 9 |
| 4 | 127.31 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 18 |
| 11 | 127.92 | wind | 5 | 90 | < th | dose independent | rect. | 15 | 14 |
| 12 | 127.97 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 22 |
| 15 | 128.19 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 21 |
| 17 | 128.28 | wind | 7 | 720 | < th | dose independent | sin | 18 | NA |
| 30 | 128.64 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 22 |
| 34 | 128.92 | wind | 7 | 720 | > th | dose independent | rect. | 14 | 8 |
| 36 | 128.96 | wind | 7 | 720 | > th | dose independent | sin | 18 | NA |
| 39 | 129.00 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 12 |
| 41 | 129.02 | wind | 7 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 43 | 129.05 | wind | 7 | 720 | > th | dose independent | rect. | 11 | 11 |
| 45 | 129.07 | wind | 7 | 720 | > th | dose independent | rect. | 11 | 14 |
| 48 | 129.10 | wind | 7 | 720 | > th | dose independent | rect. | 15 | 3 |
| 60 | 129.23 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 84 | 129.38 | wind | 7 | 720 | > th | dose dependent | rect. | 14 | 8 |
| 158 | 129.79 | wind | 7 | 720 | > th | dose dependent | sin | 18 | NA |
| 206 | 130.00 | wind | 5 | 270 | > th | dose independent | rect. | 17 | 10 |
| 212 | 130.01 | wind | 5 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 217 | 130.03 | wind | 7 | 720 | < th | dose independent | rect. | 2 | 17 |
| 218 | 130.03 | wind | 7 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 272 | 130.14 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 18 |
| 303 | 130.24 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 1 |
| 348 | 130.37 | wind | 7 | 720 | > th | dose independent | rect. | 24 | 22 |
| 371 | 130.45 | wind | 7 | 720 | > th | dose independent | no | NA | NA |
| 387 | 130.48 | wind | 7 | 720 | > th | dose independent | rect. | 19 | 23 |
| 399 | 130.53 | wind | 7 | 720 | > th | dose independent | rect. | 21 | 23 |
| 465 | 130.71 | wind | 7 | 720 | < th | dose independent | no | NA | NA |
| 487 | 130.74 | wind | 5 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 500 | 130.76 | wind | 7 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 505 | 130.77 | wind | 7 | 720 | > th | dose dependent | rect. | 24 | 22 |
| 512 | 130.80 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 23 |
| 522 | 130.81 | wind | 7 | 720 | > th | dose dependent | no | NA | NA |
| 551 | 130.88 | wind | 7 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 593 | 131.05 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 609 | 131.12 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 655 | 131.27 | wind | 7 | 720 | < th | dose independent | rect. | 2 | 23 |
| 727 | 131.52 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 23 |
| 849 | 131.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 862 | 132.06 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 3 |
| 883 | 132.13 | wind | 7 | 270 | > th | dose dependent | sin | 11 | NA |
| 953 | 132.39 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 960 | 132.42 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 977 | 132.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 984 | 132.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 989 | 132.52 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 8 |
| 997 | 132.54 | wind | 9 | 720 | < th | dose dependent | rect. | 15 | 4 |