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Os04g0585200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0255) R2 : 0.728
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.14 (0.0614) R2dC : 0.729 R2C : 0.725
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0537) R2dN8 : 0.00345 R2N8 : -0.000436
σ : 0.481
deviance : 105.72
__
_____
C
peak time of C : 10.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.14 0.446 10.5 -0.0659 1.39 -1.03 1.04 0.488 -0.157 8.72 11.42 129 -- --
90.99 0.444 10.5 -0.074 1.43 -0.992 0.723 -- -0.157 8.79 12.55 131 -- --
92.23 0.447 10.5 -0.0571 1.4 -1.03 -- -0.0197 -0.16 8.73 12.56 130 -- --
92.21 0.447 10.5 -0.0525 1.42 -1 -- -- -0.159 8.79 12.45 130 -- --
130.66 0.532 10.5 0.00644 -- -1.6 -- 0.0183 -0.12 -- 9.835 9 -- --
105.02 0.48 10.5 -0.0348 2.14 -- 0.411 -- -0.117 10.6 -- -- -- --
105.71 0.481 10.5 -0.0181 2.14 -- -- -- -0.116 10.6 -- -- -- --
129.96 0.533 10.6 0.00396 -- -1.65 -- -- -0.126 -- 10.73 11 -- --
92.28 0.447 10.5 -- 1.42 -0.997 -- -- -0.153 8.8 12.29 130 -- --
387.85 0.92 10.6 -0.0574 -- -- -- -- -0.126 -- -- -- -- --
105.72 0.481 10.5 -- 2.14 -- -- -- -0.114 10.6 -- -- -- --
129.96 0.533 10.6 -- -- -1.64 -- -- -0.126 -- 10.73 11 -- --
387.94 0.919 10.5 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.65 humidity 90.0 14400 > th dose dependent rect. 6 1
2 85.99 humidity 60.0 30 > th dose dependent rect. 17 18
5 86.27 humidity 60.0 270 > th dose dependent rect. 13 20
7 86.39 humidity 90.0 14400 < th dose independent rect. 6 1
8 86.54 wind 1.0 43200 < th dose independent rect. 2 2
10 86.60 humidity 90.0 14400 > th dose independent rect. 6 1
12 86.60 humidity 60.0 90 > th dose dependent rect. 15 20
15 86.64 precipitation 0.1 43200 > th dose dependent rect. 5 12
20 86.71 wind 1.0 43200 < th dose dependent rect. 2 2
26 86.82 wind 1.0 43200 > th dose independent rect. 2 2
39 87.10 precipitation 0.1 43200 < th dose independent rect. 6 11
40 87.10 precipitation 0.1 43200 < th dose dependent rect. 6 11
42 87.11 precipitation 0.1 43200 > th dose independent rect. 6 11
45 87.23 temperature 20.0 270 > th dose independent rect. 23 10
56 87.52 radiation 20.0 720 < th dose dependent rect. 14 13
57 87.57 humidity 90.0 14400 > th dose independent rect. 1 7
69 87.69 humidity 90.0 14400 > th dose independent rect. 3 5
70 87.71 temperature 20.0 270 > th dose independent rect. 15 17
84 87.82 radiation 40.0 720 < th dose dependent rect. 14 6
100 87.97 humidity 90.0 14400 > th dose independent rect. 22 10
101 87.99 humidity 90.0 14400 < th dose independent rect. 1 7
112 88.08 humidity 80.0 43200 > th dose dependent rect. 12 3
114 88.12 radiation 10.0 270 < th dose dependent rect. 12 7
128 88.23 wind 1.0 43200 > th dose independent rect. 1 5
143 88.29 radiation 1.0 30 > th dose independent sin 22 NA
157 88.33 wind 1.0 43200 < th dose independent rect. 2 4
161 88.35 humidity 70.0 1440 > th dose independent rect. 10 4
162 88.35 radiation 10.0 720 < th dose independent rect. 14 13
166 88.37 temperature 10.0 14400 > th dose dependent rect. 6 1
167 88.37 temperature 30.0 14400 < th dose dependent rect. 6 1
171 88.38 humidity 80.0 14400 > th dose dependent rect. 20 6
176 88.40 humidity 80.0 14400 > th dose dependent rect. 19 12
194 88.49 radiation 10.0 270 < th dose dependent rect. 9 10
204 88.53 humidity 90.0 14400 < th dose independent rect. 21 11
211 88.55 humidity 70.0 1440 < th dose independent rect. 10 4
226 88.61 radiation 10.0 90 < th dose dependent sin 22 NA
240 88.65 radiation 10.0 90 < th dose dependent rect. 6 14
243 88.67 wind 3.0 14400 > th dose independent rect. 13 2
264 88.72 wind 3.0 14400 < th dose independent rect. 13 2
265 88.72 humidity 80.0 14400 > th dose dependent sin 11 NA
285 88.77 radiation 20.0 90 < th dose dependent rect. 13 21
301 88.81 temperature 20.0 10 > th dose independent rect. 1 10
310 88.83 temperature 25.0 43200 < th dose independent rect. 15 1
311 88.83 humidity 90.0 43200 < th dose dependent rect. 14 1
312 88.84 humidity 80.0 14400 > th dose dependent rect. 22 1
325 88.87 humidity 90.0 90 < th dose independent rect. 11 18
326 88.87 temperature 30.0 14400 > th dose dependent rect. 11 1
331 88.91 precipitation 0.1 43200 > th dose independent sin 1 NA
335 88.92 precipitation 0.1 43200 < th dose independent sin 1 NA
336 88.92 temperature 30.0 14400 < th dose independent rect. 12 2
338 88.92 precipitation 0.1 43200 < th dose dependent sin 1 NA
348 88.94 wind 7.0 4320 > th dose dependent rect. 17 1
349 88.95 temperature 25.0 43200 > th dose independent rect. 15 1
351 88.95 humidity 80.0 14400 > th dose dependent rect. 24 8
370 89.00 humidity 80.0 1440 < th dose independent rect. 1 15
376 89.01 temperature 30.0 14400 > th dose independent rect. 12 1
386 89.02 temperature 30.0 14400 < th dose independent rect. 9 5
395 89.04 humidity 80.0 1440 > th dose independent rect. 24 16
397 89.04 radiation 1.0 1440 < th dose dependent rect. 9 8
403 89.05 wind 9.0 4320 > th dose independent rect. 17 4
414 89.05 temperature 30.0 14400 < th dose independent rect. 20 18
416 89.05 humidity 50.0 14400 > th dose dependent rect. 22 1
437 89.08 humidity 90.0 43200 > th dose dependent rect. 9 1
445 89.10 humidity 90.0 14400 > th dose independent sin 9 NA
446 89.10 humidity 70.0 1440 > th dose independent rect. 7 8
447 89.10 humidity 70.0 1440 > th dose independent rect. 3 12
457 89.11 humidity 70.0 1440 > th dose independent rect. 5 10
480 89.12 humidity 70.0 1440 > th dose independent rect. 20 19
506 89.14 temperature 30.0 43200 < th dose dependent rect. 13 1
535 89.16 temperature 25.0 14400 > th dose dependent rect. 6 5
556 89.17 temperature 25.0 14400 > th dose dependent rect. 8 1
579 89.19 radiation 10.0 720 < th dose dependent rect. 9 18
589 89.20 humidity 50.0 14400 > th dose dependent rect. 21 5
594 89.20 temperature 25.0 14400 > th dose dependent rect. 23 12
598 89.21 humidity 90.0 270 < th dose independent rect. 10 15
634 89.24 wind 9.0 4320 < th dose independent rect. 17 4
660 89.27 radiation 10.0 720 < th dose independent rect. 14 6
678 89.28 humidity 60.0 720 > th dose dependent rect. 12 16
680 89.29 humidity 90.0 43200 > th dose independent rect. 9 1
688 89.30 temperature 25.0 43200 > th dose independent rect. 9 9
694 89.30 humidity 80.0 43200 > th dose dependent rect. 16 1
716 89.32 temperature 25.0 14400 > th dose dependent sin 6 NA
729 89.33 temperature 25.0 43200 < th dose independent rect. 10 8
741 89.34 wind 9.0 4320 > th dose independent rect. 17 2
749 89.34 precipitation 0.1 43200 > th dose dependent rect. 9 5
756 89.35 humidity 70.0 1440 > th dose independent sin 3 NA
757 89.35 humidity 90.0 14400 < th dose independent sin 10 NA
773 89.35 precipitation 0.1 43200 > th dose dependent rect. 7 7
777 89.36 temperature 30.0 14400 < th dose independent sin 7 NA
826 89.38 humidity 80.0 43200 > th dose independent rect. 12 2
900 89.41 humidity 90.0 14400 < th dose dependent rect. 22 1
906 89.42 wind 7.0 4320 > th dose independent rect. 15 6
941 89.43 radiation 30.0 720 < th dose independent rect. 14 6
979 89.44 wind 3.0 43200 > th dose dependent rect. 7 2