Os04g0585100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os04g0585100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.04 | 0.634 | 6.79 | -3.18 | 1.17 | -0.114 | 2.88 | 9.48 | -0.59 | 1.31 | 30.68 | 1083 | -- | -- |
| 186.9 | 0.637 | 6.96 | -4.54 | 1.25 | 1.06 | 3.01 | -- | -0.569 | 1.3 | 32.33 | 1844 | -- | -- |
| 215.52 | 0.684 | 6.78 | -3.18 | 1.15 | -0.133 | -- | 10.4 | -0.594 | 1.53 | 30.8 | 1076 | -- | -- |
| 220.65 | 0.692 | 6.99 | -4.77 | 1.15 | 1.03 | -- | -- | -0.626 | 1.46 | 31.65 | 1109 | -- | -- |
| 294.86 | 0.8 | 6.74 | -3.01 | -- | -0.0314 | -- | 11.5 | -0.531 | -- | 30.9 | 1084 | -- | -- |
| 225.17 | 0.703 | 7 | -4.41 | 1.32 | -- | 3.17 | -- | -0.758 | 1.26 | -- | -- | -- | -- |
| 266.22 | 0.764 | 7.01 | -4.52 | 1.32 | -- | -- | -- | -0.776 | 1.43 | -- | -- | -- | -- |
| 280.11 | 0.779 | 7.05 | -4.97 | -- | 1.71 | -- | -- | -0.989 | -- | 24.2 | 1055 | -- | -- |
| 797.63 | 1.32 | 6.87 | -- | 1.22 | 0.363 | -- | -- | -0.203 | 1.22 | 34.2 | 1707 | -- | -- |
| 372.82 | 0.902 | 6.99 | -4.47 | -- | -- | -- | -- | -0.748 | -- | -- | -- | -- | -- |
| 804.03 | 1.33 | 6.9 | -- | 1.24 | -- | -- | -- | -0.273 | 1.3 | -- | -- | -- | -- |
| 829.24 | 1.35 | 6.85 | -- | -- | -1.64 | -- | -- | -0.106 | -- | 24.2 | 1055 | -- | -- |
| 898.73 | 1.4 | 6.88 | -- | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.07 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 3 | 174.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 6 | 175.15 | temperature | 20.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 9 | 175.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 10 | 175.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 11 | 175.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 16 | 175.86 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 19 | 176.11 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 21 | 176.17 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 27 | 176.42 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 43 | 177.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 49 | 177.60 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 55 | 177.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 61 | 178.29 | temperature | 10.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 74 | 178.53 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 77 | 178.57 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 84 | 178.67 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 90 | 178.72 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 93 | 178.81 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 105 | 179.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 107 | 179.20 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 113 | 179.49 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 127 | 179.99 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 134 | 180.26 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 140 | 180.38 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 9 |
| 165 | 180.54 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 175 | 180.63 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 226 | 180.95 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 15 |
| 230 | 180.96 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 232 | 180.97 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 250 | 181.10 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 264 | 181.18 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 290 | 181.41 | temperature | 30.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 331 | 181.67 | humidity | 50.0 | 4320 | > th | dose independent | sin | 22 | NA |
| 341 | 181.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 358 | 181.88 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 361 | 181.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 421 | 182.22 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 20 |
| 428 | 182.24 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 18 |
| 511 | 182.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 517 | 182.47 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 525 | 182.48 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 526 | 182.49 | humidity | 50.0 | 4320 | > th | dose independent | no | NA | NA |
| 570 | 182.60 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 596 | 182.69 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 614 | 182.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 617 | 182.79 | temperature | 25.0 | 720 | < th | dose independent | sin | 17 | NA |
| 641 | 183.01 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 647 | 183.04 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 670 | 183.09 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 681 | 183.15 | temperature | 10.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 691 | 183.18 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 702 | 183.23 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 704 | 183.25 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 714 | 183.34 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 733 | 183.51 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 744 | 183.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 771 | 183.75 | temperature | 30.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 806 | 183.91 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 828 | 184.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 849 | 184.14 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 869 | 184.31 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 919 | 184.67 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 949 | 184.86 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |