Os04g0585000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0585000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.03 | 0.433 | 11.6 | 0.0427 | 1.33 | 1.02 | -0.543 | 0.36 | 0.115 | 0.577 | 1.206 | 30 | -- | -- |
| 85.16 | 0.43 | 11.6 | 0.0649 | 1.32 | 1.03 | -0.147 | -- | 0.118 | 0.598 | 1.232 | 30 | -- | -- |
| 85.23 | 0.43 | 11.6 | 0.0707 | 1.32 | 1.02 | -- | -0.057 | 0.121 | 0.562 | 1.103 | 34 | -- | -- |
| 85.25 | 0.43 | 11.6 | 0.0708 | 1.32 | 1.02 | -- | -- | 0.119 | 0.566 | 1.102 | 34 | -- | -- |
| 108.62 | 0.485 | 11.6 | 0.0278 | -- | 1.94 | -- | -0.301 | 0.125 | -- | 1.725 | 32 | -- | -- |
| 106.57 | 0.484 | 11.6 | -0.00863 | 2.51 | -- | -0.121 | -- | 0.0934 | 0.239 | -- | -- | -- | -- |
| 106.64 | 0.484 | 11.6 | -0.00391 | 2.51 | -- | -- | -- | 0.094 | 0.239 | -- | -- | -- | -- |
| 106.54 | 0.481 | 11.6 | 0.121 | -- | 1.94 | -- | -- | 0.16 | -- | 1.444 | 43 | -- | -- |
| 85.38 | 0.43 | 11.6 | -- | 1.32 | 1.02 | -- | -- | 0.112 | 0.565 | 1.17 | 34 | -- | -- |
| 502.84 | 1.05 | 11.6 | 0.0784 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 106.64 | 0.483 | 11.6 | -- | 2.51 | -- | -- | -- | 0.0944 | 0.239 | -- | -- | -- | -- |
| 106.86 | 0.481 | 11.6 | -- | -- | 1.94 | -- | -- | 0.149 | -- | 1.321 | 48 | -- | -- |
| 503 | 1.05 | 11.6 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.33 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 14 |
| 2 | 80.35 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 24 | 81.38 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 26 | 82.23 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 29 | 82.60 | wind | 5.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 31 | 82.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 32 | 82.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 34 | 82.90 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 36 | 82.99 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 38 | 82.99 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 39 | 82.99 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 41 | 82.99 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 42 | 82.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 45 | 83.15 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 46 | 83.20 | radiation | 1.0 | 30 | < th | dose independent | sin | 10 | NA |
| 48 | 83.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 49 | 83.42 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 50 | 83.53 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 51 | 83.54 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 53 | 83.61 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 56 | 83.64 | radiation | 1.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 57 | 83.68 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 58 | 83.68 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 79 | 83.96 | radiation | 1.0 | 30 | > th | dose independent | sin | 10 | NA |
| 87 | 84.28 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 90 | 84.35 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 93 | 84.38 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 108 | 84.87 | radiation | 20.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 111 | 84.98 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 120 | 85.03 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 126 | 85.10 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 134 | 85.10 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 135 | 85.10 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 136 | 85.12 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 149 | 85.24 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 161 | 85.48 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 167 | 85.60 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 15 |
| 171 | 85.63 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 186 | 85.70 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 195 | 85.88 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 199 | 85.97 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 240 | 86.33 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 19 |
| 248 | 86.38 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 249 | 86.39 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 253 | 86.40 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 264 | 86.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 265 | 86.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 276 | 86.44 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 277 | 86.44 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 358 | 86.51 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 383 | 86.67 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 422 | 86.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 15 |
| 576 | 87.40 | humidity | 70.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 643 | 87.67 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 664 | 87.75 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 692 | 87.87 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 739 | 88.28 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 749 | 88.50 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 751 | 88.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 761 | 88.69 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 767 | 88.72 | temperature | 30.0 | 30 | < th | dose independent | rect. | 17 | 12 |
| 768 | 88.72 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 6 |
| 769 | 88.73 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 770 | 88.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 773 | 88.73 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 775 | 88.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 776 | 88.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 777 | 88.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 814 | 88.95 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 849 | 89.27 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 891 | 89.39 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 937 | 89.63 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 983 | 89.83 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 11 | 18 |