Os04g0584900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0584900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.4 | 0.246 | 11.4 | -0.452 | 0.318 | 1.11 | 0.507 | -0.462 | -0.258 | 21.4 | 20.73 | 95 | -- | -- |
| 27.57 | 0.245 | 11.4 | -0.367 | 0.319 | 1.08 | 0.545 | -- | -0.237 | 21.4 | 20.6 | 90 | -- | -- |
| 28.28 | 0.248 | 11.4 | -0.508 | 0.315 | 1.11 | -- | -0.684 | -0.269 | 21.3 | 20.81 | 92 | -- | -- |
| 28.7 | 0.25 | 11.4 | -0.387 | 0.314 | 1.07 | -- | -- | -0.233 | 21.2 | 20.59 | 98 | -- | -- |
| 31.43 | 0.261 | 11.4 | -0.523 | -- | 1.11 | -- | -0.714 | -0.263 | -- | 21.44 | 266 | -- | -- |
| 46.53 | 0.32 | 11.4 | -0.148 | 0.52 | -- | 0.492 | -- | -0.0524 | 18 | -- | -- | -- | -- |
| 47.08 | 0.321 | 11.4 | -0.151 | 0.524 | -- | -- | -- | -0.0501 | 17.8 | -- | -- | -- | -- |
| 31.82 | 0.263 | 11.4 | -0.386 | -- | 1.05 | -- | -- | -0.229 | -- | 21.3 | 272 | -- | -- |
| 32.35 | 0.265 | 11.4 | -- | 0.317 | 0.933 | -- | -- | -0.168 | 20.6 | 21.03 | 97 | -- | -- |
| 61.3 | 0.366 | 11.3 | -0.168 | -- | -- | -- | -- | -0.0625 | -- | -- | -- | -- | -- |
| 47.69 | 0.323 | 11.4 | -- | 0.526 | -- | -- | -- | -0.0333 | 17.8 | -- | -- | -- | -- |
| 35.47 | 0.277 | 11.4 | -- | -- | 0.966 | -- | -- | -0.164 | -- | 22.35 | 268 | -- | -- |
| 62.04 | 0.368 | 11.3 | -- | -- | -- | -- | -- | -0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 39 | 27.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 54 | 27.56 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 85 | 28.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 88 | 28.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 93 | 28.14 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 102 | 28.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 107 | 28.46 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 114 | 28.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 115 | 28.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 117 | 28.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 129 | 28.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 130 | 28.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 134 | 28.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 135 | 28.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 142 | 28.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 152 | 28.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 171 | 29.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 237 | 29.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 240 | 29.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 244 | 29.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 383 | 30.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 423 | 30.76 | temperature | 15 | 10 | > th | dose dependent | sin | 21 | NA |
| 428 | 30.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 474 | 30.99 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 20 |
| 489 | 31.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 503 | 31.06 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 15 |
| 509 | 31.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 567 | 31.25 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 594 | 31.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 624 | 31.37 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 22 |
| 655 | 31.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 831 | 31.79 | temperature | 20 | 720 | > th | dose dependent | sin | 1 | NA |
| 872 | 31.87 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 917 | 31.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 5 |