Os04g0584700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os04g0584700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.58 | 0.594 | 5.75 | 0.723 | 2.48 | 1.34 | 2.45 | 1.81 | -0.424 | 19.3 | 10 | 295 | -- | -- |
| 163.4 | 0.595 | 5.76 | 0.702 | 2.39 | 1.29 | 2.41 | -- | -0.463 | 19.2 | 8.914 | 367 | -- | -- |
| 173.38 | 0.613 | 5.75 | 0.675 | 2.32 | 1.35 | -- | 2 | -0.439 | 19.2 | 11.15 | 378 | -- | -- |
| 179.54 | 0.624 | 5.75 | 0.626 | 2.33 | 1.36 | -- | -- | -0.457 | 19.3 | 9.168 | 378 | -- | -- |
| 266.93 | 0.761 | 5.73 | 0.526 | -- | 3.05 | -- | 2.37 | -0.66 | -- | -225.7 | 733 | -- | -- |
| 186.79 | 0.641 | 5.74 | 0.755 | 2.85 | -- | 2.81 | -- | -0.332 | 18.5 | -- | -- | -- | -- |
| 206.5 | 0.673 | 5.73 | 0.718 | 2.86 | -- | -- | -- | -0.323 | 18.4 | -- | -- | -- | -- |
| 276.94 | 0.775 | 5.74 | 0.486 | -- | 3.13 | -- | -- | -0.684 | -- | -210.5 | 732 | -- | -- |
| 189.69 | 0.641 | 5.77 | -- | 2.3 | 1.44 | -- | -- | -0.533 | 19.3 | 10 | 379 | -- | -- |
| 631.12 | 1.17 | 5.68 | 0.645 | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
| 220.08 | 0.694 | 5.75 | -- | 2.85 | -- | -- | -- | -0.403 | 18.4 | -- | -- | -- | -- |
| 283.15 | 0.784 | 5.76 | -- | -- | 3.14 | -- | -- | -0.739 | -- | -187.7 | 732 | -- | -- |
| 642.08 | 1.18 | 5.69 | -- | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 2 | 153.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 3 | 154.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 13 | 154.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 15 | 155.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 16 | 155.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 11 |
| 17 | 155.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 36 | 155.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 48 | 156.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 13 |
| 51 | 156.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 15 |
| 59 | 156.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 17 |
| 72 | 156.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 15 |
| 86 | 157.01 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 98 | 157.19 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 16 |
| 117 | 157.56 | temperature | 25 | 10 | > th | dose dependent | sin | 20 | NA |
| 120 | 157.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 129 | 157.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 135 | 157.78 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 146 | 157.88 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 147 | 157.88 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 150 | 157.92 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 154 | 157.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 159 | 157.98 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 14 |
| 168 | 158.09 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 192 | 158.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 211 | 158.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 234 | 158.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 247 | 158.65 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 15 |
| 256 | 158.72 | radiation | 1 | 270 | > th | dose dependent | sin | 22 | NA |
| 276 | 158.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 299 | 159.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 19 |
| 306 | 159.06 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 23 |
| 337 | 159.27 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 369 | 159.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 380 | 159.41 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 398 | 159.53 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 468 | 159.84 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 469 | 159.84 | radiation | 40 | 270 | < th | dose dependent | sin | 22 | NA |
| 472 | 159.86 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 19 |
| 473 | 159.86 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 483 | 159.90 | radiation | 30 | 270 | < th | dose independent | rect. | 13 | 22 |
| 498 | 159.97 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 506 | 160.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 522 | 160.10 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 573 | 160.20 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 579 | 160.23 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 580 | 160.23 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 15 |
| 668 | 160.50 | radiation | 10 | 270 | > th | dose dependent | no | NA | NA |
| 759 | 160.51 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 6 |
| 764 | 160.52 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 800 | 160.63 | radiation | 20 | 270 | > th | dose independent | rect. | 10 | 23 |