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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0584600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium dependent protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0221) R2 : 0.569
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.29 (0.0531) R2dC : 0.561 R2C : 0.556
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0464) R2dN8 : 0.0135 R2N8 : 0.00835
σ : 0.416
deviance : 79.12
__
_____
C
peak time of C : 22.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.49 0.359 12.3 0.663 0.762 0.785 0.00906 0.0827 0.278 20.4 22.08 93 -- --
58.51 0.356 12.3 0.663 0.756 0.79 0.0615 -- 0.279 20.4 22.01 90 -- --
58.49 0.356 12.3 0.662 0.761 0.784 -- 0.0879 0.278 20.5 22.33 90 -- --
58.52 0.356 12.3 0.66 0.757 0.788 -- -- 0.279 20.4 22.14 90 -- --
71.98 0.397 12.3 0.614 -- 1.03 -- -0.059 0.228 -- 11.81 16 -- --
68.97 0.389 12.3 0.623 1.29 -- 0.0721 -- 0.224 22.6 -- -- -- --
69 0.389 12.3 0.62 1.29 -- -- -- 0.223 22.6 -- -- -- --
71.9 0.397 12.3 0.611 -- 1.02 -- -- 0.228 -- 11.26 26 -- --
69.26 0.388 12.3 -- 0.666 0.78 -- -- 0.207 20.2 13.51 66 -- --
170.66 0.61 12.3 0.643 -- -- -- -- 0.229 -- -- -- -- --
79.12 0.416 12.3 -- 1.29 -- -- -- 0.154 22.6 -- -- -- --
81.32 0.421 12.3 -- -- 1.02 -- -- 0.165 -- 10.05 18 -- --
181.57 0.629 12.3 -- -- -- -- -- 0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.60 temperature 25.0 10 < th dose independent rect. 12 8
6 57.76 humidity 80.0 30 > th dose independent rect. 1 19
8 57.82 temperature 30.0 10 < th dose dependent rect. 12 8
11 57.95 humidity 70.0 10 > th dose dependent sin 23 NA
16 58.11 radiation 20.0 90 < th dose dependent rect. 21 23
19 58.20 radiation 20.0 90 < th dose dependent sin 0 NA
20 58.21 humidity 80.0 30 > th dose independent rect. 7 13
30 58.40 radiation 20.0 90 < th dose dependent rect. 11 23
35 58.53 humidity 80.0 30 > th dose independent sin 23 NA
37 58.55 radiation 20.0 90 < th dose dependent no NA NA
44 58.65 radiation 10.0 90 > th dose independent rect. 8 23
55 58.73 humidity 70.0 10 > th dose dependent rect. 7 13
58 58.76 radiation 20.0 90 < th dose dependent rect. 9 23
65 58.81 radiation 1.0 270 < th dose dependent rect. 5 13
68 58.83 humidity 80.0 30 > th dose independent rect. 5 15
70 58.84 humidity 60.0 10 > th dose dependent rect. 12 8
73 58.90 humidity 70.0 30 > th dose dependent rect. 1 19
84 59.02 radiation 20.0 90 < th dose dependent rect. 15 23
95 59.16 radiation 10.0 90 > th dose independent sin 0 NA
108 59.25 humidity 70.0 90 > th dose dependent rect. 5 15
112 59.29 humidity 70.0 30 > th dose dependent rect. 21 23
118 59.32 humidity 80.0 30 < th dose independent sin 0 NA
120 59.33 humidity 80.0 10 > th dose independent rect. 10 10
122 59.35 radiation 10.0 90 > th dose independent no NA NA
123 59.35 radiation 10.0 90 > th dose independent rect. 6 12
208 59.37 humidity 70.0 10 > th dose dependent rect. 10 10
211 59.39 humidity 80.0 10 > th dose independent rect. 12 8
260 59.53 radiation 20.0 30 < th dose dependent rect. 17 23
273 59.57 radiation 20.0 270 < th dose dependent rect. 10 8
277 59.59 precipitation 0.1 270 > th dose independent rect. 24 18
292 59.64 humidity 60.0 10 > th dose dependent rect. 12 22
299 59.66 humidity 70.0 10 > th dose dependent rect. 1 23
300 59.66 humidity 60.0 10 > th dose dependent rect. 17 23
310 59.69 temperature 30.0 30 < th dose dependent rect. 5 15
317 59.72 radiation 10.0 90 > th dose independent rect. 15 23
321 59.73 radiation 10.0 90 > th dose independent rect. 8 10
365 59.78 radiation 10.0 90 < th dose dependent rect. 7 11
373 59.80 humidity 70.0 30 > th dose dependent rect. 19 23
374 59.80 humidity 90.0 10 < th dose dependent rect. 19 23
389 59.84 humidity 70.0 30 > th dose dependent no NA NA
407 59.88 humidity 70.0 30 > th dose dependent rect. 15 23
420 59.91 radiation 10.0 1440 > th dose independent rect. 8 6
436 59.95 radiation 10.0 90 < th dose independent sin 0 NA
437 59.95 radiation 10.0 1440 > th dose independent rect. 9 4
450 59.99 temperature 20.0 10 > th dose dependent rect. 8 17
468 60.04 temperature 25.0 30 > th dose independent rect. 8 20
470 60.04 temperature 30.0 30 < th dose dependent rect. 2 18
474 60.04 humidity 70.0 30 > th dose dependent rect. 9 23
498 60.11 radiation 1.0 90 < th dose independent rect. 5 13
499 60.11 temperature 25.0 30 > th dose independent rect. 8 18
507 60.12 radiation 20.0 4320 < th dose dependent rect. 21 8
523 60.14 radiation 20.0 270 < th dose independent rect. 10 8
561 60.22 radiation 10.0 720 > th dose independent rect. 10 21
564 60.22 radiation 20.0 90 < th dose dependent rect. 1 23
572 60.23 radiation 20.0 90 < th dose dependent rect. 7 23
599 60.28 radiation 10.0 90 < th dose independent rect. 21 23
612 60.29 radiation 1.0 90 > th dose dependent rect. 15 23
622 60.32 temperature 25.0 30 < th dose independent rect. 5 16
625 60.32 radiation 10.0 1440 < th dose dependent rect. 9 5
660 60.40 radiation 1.0 90 > th dose dependent rect. 5 13
673 60.40 radiation 1.0 90 > th dose dependent rect. 13 23
680 60.41 radiation 1.0 90 > th dose dependent no NA NA
741 60.42 radiation 30.0 270 < th dose dependent rect. 1 17
773 60.48 humidity 80.0 30 < th dose independent rect. 6 11
774 60.48 humidity 80.0 30 < th dose independent rect. 24 17
789 60.48 radiation 20.0 90 < th dose dependent rect. 19 23
793 60.49 precipitation 0.1 270 > th dose dependent rect. 24 18
799 60.50 precipitation 0.1 270 > th dose independent sin 2 NA
841 60.53 radiation 10.0 720 < th dose dependent rect. 10 17
848 60.54 precipitation 0.1 270 < th dose independent sin 2 NA
854 60.54 precipitation 0.1 270 < th dose dependent sin 2 NA
864 60.55 precipitation 0.1 270 > th dose dependent sin 2 NA
878 60.56 radiation 10.0 90 > th dose independent rect. 13 23
899 60.58 radiation 20.0 270 < th dose independent rect. 1 16
925 60.60 radiation 20.0 1440 < th dose dependent rect. 11 3
983 60.66 radiation 10.0 90 < th dose independent rect. 11 23
998 60.68 radiation 10.0 720 > th dose independent rect. 10 8