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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0584300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0361) R2 : 0.00112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0542 (0.0759) R2dN8 : 0.00144 R2N8 : 0.00112
σ : 0.679
deviance : 211.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.08 0.639 3.08 0.212 0.267 0.77 0.63 1.03 0.163 19.9 77.91 361 -- --
187.45 0.638 3.08 0.26 0.267 0.778 0.299 -- 0.179 20.2 78 354 -- --
186.07 0.635 3.08 0.217 0.262 0.766 -- 0.794 0.164 19.9 77.91 349 -- --
187.73 0.638 3.08 0.255 0.267 0.781 -- -- 0.169 20.2 78 354 -- --
187.29 0.637 3.07 0.249 -- 0.595 -- 0.673 0.147 -- 78.66 213 -- --
199.71 0.663 3.09 0.344 0.373 -- 0.462 -- 0.086 3.19 -- -- -- --
200.37 0.663 3.09 0.334 0.378 -- -- -- 0.0831 3.44 -- -- -- --
188.73 0.64 3.08 0.279 -- 0.604 -- -- 0.153 -- 79 199 -- --
189.41 0.641 3.09 -- 0.273 0.806 -- -- 0.147 20 78.65 348 -- --
208.38 0.675 3.09 0.35 -- -- -- -- 0.0931 -- -- -- -- --
203.32 0.667 3.1 -- 0.384 -- -- -- 0.0458 3.44 -- -- -- --
190.73 0.643 3.09 -- -- 0.626 -- -- 0.128 -- 79.74 200 -- --
211.62 0.679 3.1 -- -- -- -- -- 0.0542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.67 humidity 50.0 30 > th dose dependent rect. 16 15
10 182.89 humidity 80.0 270 > th dose dependent rect. 8 22
13 183.12 humidity 70.0 10 > th dose independent rect. 16 15
23 183.82 humidity 80.0 270 > th dose independent rect. 9 21
45 184.51 humidity 60.0 90 > th dose independent rect. 16 14
62 185.00 humidity 80.0 270 > th dose independent rect. 14 16
65 185.06 temperature 30.0 10 < th dose independent rect. 16 15
80 185.27 temperature 30.0 90 < th dose independent rect. 16 14
82 185.30 humidity 80.0 270 > th dose dependent rect. 1 22
88 185.39 radiation 1.0 10 > th dose independent rect. 5 1
125 185.75 humidity 80.0 270 > th dose dependent rect. 13 23
129 185.79 humidity 70.0 10 > th dose independent rect. 14 17
130 185.79 humidity 80.0 270 > th dose dependent no NA NA
151 186.02 humidity 80.0 270 > th dose dependent rect. 5 23
157 186.05 humidity 80.0 270 > th dose dependent rect. 19 23
160 186.08 temperature 10.0 10 > th dose dependent rect. 6 23
216 186.57 radiation 1.0 720 > th dose independent rect. 10 8
240 186.72 radiation 1.0 10 > th dose dependent rect. 18 12
286 187.03 radiation 1.0 720 > th dose independent rect. 13 5
293 187.04 radiation 10.0 720 < th dose dependent sin 15 NA
296 187.06 humidity 80.0 270 > th dose independent rect. 23 23
299 187.07 radiation 1.0 720 > th dose independent sin 20 NA
303 187.10 radiation 10.0 720 < th dose dependent rect. 8 12
308 187.13 temperature 10.0 270 > th dose dependent rect. 6 19
313 187.15 wind 1.0 90 > th dose independent rect. 6 23
320 187.19 temperature 15.0 30 > th dose dependent rect. 5 1
331 187.25 humidity 50.0 270 > th dose dependent sin 12 NA
333 187.27 temperature 20.0 30 > th dose independent rect. 5 1
338 187.28 humidity 80.0 720 > th dose independent rect. 9 11
340 187.29 radiation 1.0 10 > th dose dependent rect. 5 1
352 187.30 humidity 80.0 720 > th dose independent rect. 2 18
373 187.39 radiation 10.0 720 < th dose dependent rect. 15 8
375 187.40 atmosphere 1005.0 30 > th dose independent rect. 5 1
388 187.42 humidity 70.0 720 > th dose dependent rect. 16 2
391 187.43 radiation 10.0 720 < th dose dependent rect. 14 6
404 187.50 radiation 1.0 720 < th dose dependent rect. 14 4
408 187.50 radiation 10.0 720 < th dose dependent rect. 8 20
418 187.54 radiation 40.0 720 < th dose dependent rect. 15 8
422 187.56 humidity 80.0 720 < th dose independent rect. 14 5
432 187.58 wind 7.0 10 < th dose independent rect. 6 23
453 187.66 radiation 10.0 720 < th dose independent rect. 15 16
461 187.69 radiation 10.0 720 < th dose independent sin 14 NA
483 187.77 radiation 10.0 30 < th dose independent rect. 5 13
495 187.81 radiation 1.0 720 > th dose independent rect. 13 16
497 187.81 humidity 80.0 270 > th dose independent rect. 14 22
518 187.83 radiation 10.0 720 < th dose dependent rect. 15 12
519 187.84 humidity 90.0 270 < th dose independent rect. 1 22
523 187.85 humidity 80.0 720 > th dose independent rect. 13 7
539 187.88 radiation 10.0 720 < th dose independent rect. 15 8
542 187.90 radiation 1.0 720 < th dose independent rect. 14 4
549 187.91 radiation 10.0 720 < th dose dependent rect. 14 14
556 187.93 humidity 80.0 270 > th dose independent no NA NA
558 187.93 atmosphere 1010.0 10 < th dose independent rect. 5 2
564 187.95 precipitation 0.1 10 < th dose independent rect. 6 23
569 187.95 precipitation 0.1 10 < th dose dependent rect. 6 23
586 187.98 humidity 90.0 270 < th dose dependent rect. 18 14
598 188.01 humidity 70.0 10 > th dose independent rect. 12 19
605 188.02 humidity 80.0 720 > th dose dependent rect. 9 10
606 188.02 radiation 10.0 30 < th dose dependent rect. 5 13
610 188.03 wind 1.0 270 < th dose dependent rect. 24 5
622 188.05 radiation 1.0 720 > th dose independent rect. 11 18
623 188.05 humidity 90.0 720 < th dose dependent rect. 14 4
661 188.11 humidity 80.0 270 > th dose independent rect. 20 23
676 188.15 wind 1.0 270 < th dose independent rect. 1 4
692 188.19 radiation 40.0 720 < th dose dependent rect. 15 16
704 188.24 radiation 1.0 720 < th dose independent sin 19 NA
706 188.24 humidity 90.0 720 < th dose independent rect. 9 9
716 188.26 humidity 90.0 720 > th dose independent rect. 15 3
723 188.27 temperature 15.0 10 > th dose dependent rect. 7 19
741 188.31 humidity 80.0 720 < th dose independent rect. 23 20
749 188.32 humidity 90.0 270 < th dose independent rect. 23 23
765 188.35 humidity 90.0 270 < th dose dependent sin 11 NA
766 188.35 humidity 70.0 720 > th dose dependent rect. 2 18
794 188.39 radiation 1.0 720 < th dose independent rect. 14 13
840 188.48 humidity 80.0 720 > th dose independent sin 21 NA
865 188.52 humidity 80.0 720 > th dose independent rect. 5 15
867 188.52 radiation 1.0 720 < th dose independent rect. 11 16
869 188.52 humidity 90.0 270 < th dose independent rect. 6 18
878 188.54 humidity 80.0 720 < th dose independent sin 21 NA
968 188.66 radiation 1.0 720 > th dose dependent rect. 15 3
975 188.67 humidity 90.0 270 < th dose independent rect. 6 23