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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0583800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0328) R2 : 0.8
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.75 (0.0653) R2dE : 0.778 R2E : 0.773
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.476 (0.0691) R2dN8 : 0.0269 R2N8 : 0.0222
σ : 0.616
deviance : 175.11
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.13
memory length : 676
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.69
open length of G : 3.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.37 0.578 6.43 -0.258 1.05 -2.15 -1.5 0.579 -0.463 3.31 15.1 712 4.28 2.86
150.95 0.572 6.44 -0.281 1.02 -2.11 -1.9 -- -0.498 2.93 15.14 693 4.42 3.03
153.43 0.577 6.45 -0.297 0.998 -2.13 -- 1.28 -0.498 3.13 15.08 692 4.45 3
163.19 0.595 6.44 -0.251 0.987 -2.13 -- -- -0.492 2.98 15.13 688 4.47 3.07
168.62 0.605 6.47 -0.307 -- -2.63 -- 1.23 -0.501 -- 14.9 698 4.95 2.75
205.11 0.671 6.5 -0.384 3.2 -- -1.17 -- -0.579 0.66 -- -- -- --
210.93 0.68 6.5 -0.34 3.2 -- -- -- -0.573 0.636 -- -- -- --
173.58 0.614 6.46 -0.263 -- -2.73 -- -- -0.552 -- 15.1 675 4.73 3.83
164.84 0.598 6.43 -- 0.951 -2.18 -- -- -0.472 3.17 15.1 687 4.45 3.12
854.23 1.37 6.44 -0.226 -- -- -- -- -0.517 -- -- -- -- --
213.97 0.684 6.49 -- 3.2 -- -- -- -0.535 0.631 -- -- -- --
175.11 0.616 6.43 -- -- -2.75 -- -- -0.476 -- 15.13 676 4.69 3.88
855.58 1.37 6.44 -- -- -- -- -- -0.492 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.28 temperature 15.0 720 > th dose independent rect. 4 3
2 156.43 temperature 20.0 270 > th dose independent rect. 4 11
6 159.05 temperature 10.0 270 > th dose dependent rect. 4 11
15 160.37 temperature 10.0 720 > th dose dependent rect. 5 2
21 162.17 temperature 15.0 720 > th dose independent rect. 19 22
31 163.36 atmosphere 1015.0 720 < th dose independent rect. 3 14
33 163.52 temperature 10.0 10 > th dose dependent rect. 6 12
35 163.71 humidity 70.0 720 > th dose independent rect. 21 10
46 164.63 temperature 25.0 270 < th dose dependent rect. 2 10
61 165.67 radiation 30.0 720 < th dose independent rect. 21 10
63 165.79 atmosphere 1015.0 720 < th dose independent rect. 7 14
66 165.91 temperature 10.0 720 > th dose independent rect. 21 10
67 165.91 temperature 30.0 720 < th dose independent rect. 21 10
68 165.91 humidity 50.0 720 > th dose independent rect. 21 10
70 165.91 atmosphere 995.0 720 > th dose independent rect. 21 10
72 165.91 temperature 10.0 720 > th dose independent rect. 7 14
76 166.11 temperature 10.0 720 > th dose independent rect. 9 10
77 166.11 atmosphere 1015.0 720 < th dose independent rect. 9 10
78 166.11 temperature 10.0 720 > th dose independent rect. 19 14
79 166.11 humidity 50.0 720 > th dose independent rect. 19 14
80 166.11 atmosphere 995.0 720 > th dose independent rect. 19 14
83 166.22 temperature 25.0 270 < th dose dependent rect. 1 19
92 166.73 temperature 10.0 720 > th dose independent rect. 7 6
93 166.73 atmosphere 995.0 720 > th dose independent rect. 7 6
94 166.73 atmosphere 1015.0 720 < th dose independent rect. 7 6
95 166.73 temperature 10.0 720 > th dose independent rect. 13 18
98 166.76 temperature 10.0 720 > th dose independent rect. 19 6
99 166.76 temperature 30.0 720 < th dose independent rect. 19 6
100 166.76 humidity 50.0 720 > th dose independent rect. 19 6
101 166.76 atmosphere 995.0 720 > th dose independent rect. 19 6
102 166.76 radiation 1.0 720 < th dose independent rect. 19 6
107 166.76 temperature 10.0 720 > th dose independent rect. 1 18
108 166.76 temperature 25.0 270 < th dose dependent sin 4 NA
109 166.76 radiation 10.0 720 < th dose dependent rect. 19 6
122 167.04 wind 9.0 720 < th dose independent rect. 21 10
125 167.18 precipitation 0.1 720 < th dose independent rect. 21 10
126 167.18 precipitation 0.1 720 < th dose dependent rect. 21 10
139 167.52 wind 9.0 720 < th dose independent rect. 19 14
144 167.74 atmosphere 995.0 720 > th dose independent rect. 5 10
146 167.78 humidity 70.0 720 > th dose independent rect. 5 2
152 167.89 wind 9.0 720 < th dose independent rect. 19 6
153 167.90 atmosphere 995.0 720 > th dose independent rect. 19 21
162 168.17 humidity 70.0 720 > th dose independent rect. 19 13
168 168.30 precipitation 0.1 720 < th dose independent rect. 7 6
169 168.30 precipitation 0.1 720 < th dose dependent rect. 7 6
175 168.56 temperature 15.0 270 > th dose dependent rect. 19 21
178 168.66 wind 9.0 720 < th dose independent rect. 17 2
184 168.77 radiation 20.0 720 < th dose independent rect. 17 2
186 168.80 precipitation 0.1 720 < th dose independent rect. 5 2
187 168.80 precipitation 0.1 720 < th dose dependent rect. 5 2
192 168.96 radiation 1.0 720 < th dose dependent rect. 24 11
203 169.23 temperature 10.0 720 > th dose independent rect. 17 2
204 169.23 atmosphere 1015.0 720 < th dose independent rect. 17 2
210 169.28 wind 9.0 270 < th dose independent rect. 4 11
211 169.30 radiation 30.0 720 < th dose independent rect. 5 2
216 169.47 wind 7.0 720 < th dose independent rect. 5 2
219 169.47 temperature 30.0 720 < th dose independent rect. 5 2
220 169.47 humidity 50.0 720 > th dose independent rect. 5 2
222 169.47 atmosphere 995.0 720 > th dose independent rect. 5 2
223 169.47 atmosphere 1015.0 720 < th dose independent rect. 5 2
225 169.47 temperature 10.0 720 > th dose independent rect. 7 22
230 169.53 wind 9.0 720 < th dose independent rect. 17 10
231 169.54 wind 9.0 270 < th dose independent rect. 15 13
235 169.58 atmosphere 995.0 720 > th dose independent rect. 12 4
236 169.59 humidity 70.0 720 > th dose independent rect. 4 4
246 169.71 wind 9.0 720 < th dose independent rect. 7 6
247 169.71 radiation 40.0 720 < th dose independent rect. 19 14
248 169.75 precipitation 0.1 720 < th dose independent rect. 5 10
249 169.75 precipitation 0.1 720 < th dose dependent rect. 5 10
263 169.99 humidity 90.0 90 < th dose independent rect. 6 11
270 170.05 radiation 40.0 720 < th dose dependent rect. 21 10
273 170.10 temperature 20.0 270 < th dose independent rect. 3 9
274 170.10 temperature 30.0 720 < th dose independent rect. 19 14
284 170.31 temperature 20.0 270 < th dose independent sin 3 NA
292 170.48 radiation 20.0 720 < th dose independent rect. 17 10
295 170.52 temperature 30.0 720 < th dose dependent rect. 1 2
308 170.74 atmosphere 1015.0 270 < th dose independent rect. 4 11
309 170.74 temperature 10.0 270 > th dose independent rect. 15 13
311 170.77 radiation 40.0 720 < th dose dependent rect. 17 2
313 170.82 precipitation 0.1 270 < th dose independent rect. 15 13
314 170.82 precipitation 0.1 270 < th dose dependent rect. 15 13
315 170.83 atmosphere 1015.0 720 < th dose independent rect. 3 6
321 170.85 temperature 10.0 720 > th dose independent rect. 17 10
335 170.97 atmosphere 1015.0 270 < th dose independent rect. 24 11
336 170.99 temperature 10.0 270 > th dose independent rect. 24 11
337 170.99 atmosphere 995.0 270 > th dose independent rect. 24 11
338 170.99 temperature 10.0 270 > th dose independent rect. 11 13
342 171.03 temperature 30.0 90 < th dose dependent rect. 16 20
356 171.11 wind 7.0 720 < th dose independent rect. 24 4
361 171.20 humidity 50.0 270 > th dose independent rect. 24 11
367 171.27 precipitation 0.1 720 < th dose independent rect. 17 2
368 171.27 precipitation 0.1 720 < th dose dependent rect. 17 2
373 171.32 radiation 40.0 270 < th dose independent rect. 15 13
375 171.32 radiation 40.0 270 < th dose dependent rect. 19 13
394 171.56 wind 1.0 720 > th dose independent rect. 17 2
404 171.62 wind 9.0 720 < th dose independent rect. 1 18
414 171.72 atmosphere 1000.0 90 > th dose independent rect. 13 13
429 171.84 precipitation 0.1 720 < th dose independent rect. 9 10
430 171.84 precipitation 0.1 720 < th dose dependent rect. 9 10
443 171.89 precipitation 0.1 720 < th dose independent rect. 19 14
444 171.89 precipitation 0.1 720 < th dose dependent rect. 19 14
446 171.91 temperature 20.0 270 > th dose independent sin 2 NA
490 172.11 radiation 40.0 720 < th dose dependent rect. 5 2
523 172.31 precipitation 0.1 270 < th dose independent rect. 24 11
524 172.31 precipitation 0.1 270 < th dose dependent rect. 24 11
530 172.35 temperature 15.0 270 > th dose dependent sin 3 NA
538 172.37 wind 9.0 270 < th dose independent rect. 24 11
542 172.44 precipitation 0.1 720 < th dose independent rect. 3 14
545 172.44 precipitation 0.1 720 < th dose dependent rect. 3 14
553 172.50 wind 9.0 720 < th dose independent rect. 7 22
582 172.70 temperature 10.0 720 > th dose independent rect. 12 4
583 172.70 atmosphere 1015.0 720 < th dose independent rect. 12 4
584 172.70 temperature 10.0 720 > th dose independent rect. 16 20
587 172.71 wind 9.0 720 < th dose independent rect. 7 14
599 172.79 wind 9.0 720 < th dose independent rect. 9 10
623 172.92 temperature 20.0 270 < th dose independent rect. 1 18
625 172.96 precipitation 0.1 720 < th dose independent rect. 12 4
626 172.96 precipitation 0.1 720 < th dose dependent rect. 12 4
631 173.00 temperature 10.0 720 > th dose independent rect. 24 4
632 173.00 temperature 30.0 720 < th dose independent rect. 24 4
633 173.00 humidity 50.0 720 > th dose independent rect. 24 4
636 173.00 atmosphere 995.0 720 > th dose independent rect. 24 4
637 173.00 radiation 1.0 720 < th dose independent rect. 24 4
642 173.00 temperature 10.0 720 > th dose independent rect. 4 20
643 173.00 wind 9.0 720 < th dose dependent rect. 1 2
644 173.00 radiation 1.0 720 < th dose dependent rect. 24 4
652 173.02 atmosphere 1000.0 10 > th dose independent rect. 13 13
683 173.22 wind 9.0 270 < th dose independent rect. 11 13
688 173.23 humidity 50.0 720 > th dose dependent rect. 5 2
723 173.45 atmosphere 995.0 90 > th dose independent rect. 2 11
724 173.45 atmosphere 1015.0 90 < th dose independent rect. 2 11
732 173.47 wind 9.0 720 < th dose independent rect. 16 20
736 173.53 humidity 50.0 720 > th dose independent rect. 7 5
745 173.59 atmosphere 995.0 270 > th dose independent rect. 11 13
762 173.66 radiation 20.0 14400 < th dose independent rect. 18 12
763 173.67 wind 1.0 270 > th dose independent rect. 11 13
769 173.69 wind 1.0 720 > th dose independent rect. 12 4
770 173.69 wind 9.0 90 < th dose independent rect. 17 12
771 173.70 radiation 40.0 720 < th dose dependent rect. 17 10
776 173.75 precipitation 0.1 90 < th dose independent rect. 2 11
779 173.75 precipitation 0.1 90 < th dose dependent rect. 2 11
790 173.81 precipitation 0.1 720 < th dose independent rect. 19 6
792 173.81 precipitation 0.1 720 < th dose dependent rect. 19 6
815 173.89 humidity 50.0 270 > th dose independent rect. 4 11
818 173.92 wind 1.0 720 > th dose independent rect. 7 5
826 173.96 temperature 10.0 90 > th dose independent rect. 17 12
828 173.96 radiation 20.0 90 < th dose independent rect. 17 12
834 173.99 humidity 50.0 90 > th dose independent rect. 2 11
835 173.99 radiation 40.0 90 < th dose dependent rect. 17 12
839 174.02 precipitation 0.1 270 < th dose independent rect. 11 13
840 174.02 precipitation 0.1 270 < th dose dependent rect. 11 13
862 174.13 humidity 50.0 90 > th dose independent rect. 17 12
880 174.24 humidity 50.0 720 > th dose independent rect. 17 2
911 174.35 precipitation 0.1 720 < th dose independent rect. 24 4
913 174.35 precipitation 0.1 720 < th dose dependent rect. 24 4
923 174.41 temperature 10.0 720 > th dose dependent rect. 17 2
931 174.43 precipitation 0.1 720 < th dose independent rect. 19 22
934 174.43 precipitation 0.1 720 < th dose dependent rect. 19 22
955 174.56 atmosphere 995.0 720 > th dose independent rect. 4 20
987 174.65 precipitation 0.1 720 < th dose independent rect. 4 20
989 174.65 precipitation 0.1 720 < th dose dependent rect. 4 20