Os04g0583500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Expansin 4 (Fragment).
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Os04g0583500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Expansin 4 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.52 | 0.454 | 10.5 | 0.0333 | 1.2 | -1.34 | -0.0295 | 1.95 | -0.359 | 21.5 | 28.33 | 79 | -- | -- |
| 101.34 | 0.469 | 10.5 | 0.0904 | 1.09 | -1.74 | 1.32 | -- | -0.345 | 21.3 | 216.9 | 77 | -- | -- |
| 93.49 | 0.45 | 10.5 | 0.0409 | 1.21 | -1.34 | -- | 1.93 | -0.358 | 21.5 | 27.93 | 77 | -- | -- |
| 107.01 | 0.482 | 10.5 | 0.0457 | 1.04 | -1.6 | -- | -- | -0.337 | 20.8 | 233.3 | 77 | -- | -- |
| 121.68 | 0.514 | 10.5 | -0.128 | -- | -1.28 | -- | 2.14 | -0.395 | -- | 24.91 | 620 | -- | -- |
| 134.98 | 0.545 | 10.5 | 0.0555 | 0.942 | -- | -1.08 | -- | -0.263 | 16.8 | -- | -- | -- | -- |
| 137.34 | 0.549 | 10.5 | 0.0487 | 0.948 | -- | -- | -- | -0.269 | 17.2 | -- | -- | -- | -- |
| 124.94 | 0.521 | 10.5 | -0.0203 | -- | -1.29 | -- | -- | -0.379 | -- | 16.87 | 698 | -- | -- |
| 107.07 | 0.482 | 10.5 | -- | 1.04 | -1.6 | -- | -- | -0.342 | 20.8 | 278.8 | 77 | -- | -- |
| 184.37 | 0.634 | 10.5 | 0.0153 | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
| 137.4 | 0.548 | 10.5 | -- | 0.947 | -- | -- | -- | -0.274 | 17.2 | -- | -- | -- | -- |
| 124.95 | 0.521 | 10.5 | -- | -- | -1.29 | -- | -- | -0.374 | -- | 16.45 | 698 | -- | -- |
| 184.38 | 0.634 | 10.5 | -- | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.94 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 95.08 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 9 | 95.14 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 12 | 96.28 | radiation | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 15 | 96.50 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 19 | 96.92 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 97.16 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 39 | 97.45 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 74 | 97.69 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 124 | 98.04 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 144 | 98.66 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 23 |
| 167 | 99.13 | humidity | 50 | 10 | > th | dose dependent | sin | 1 | NA |
| 176 | 99.39 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 10 |
| 191 | 99.47 | radiation | 20 | 90 | < th | dose independent | sin | 5 | NA |
| 237 | 100.26 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 238 | 100.26 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 317 | 100.27 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 320 | 100.31 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 321 | 100.35 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 322 | 100.35 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 343 | 100.50 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 344 | 100.51 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 363 | 100.75 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 370 | 100.83 | radiation | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 406 | 101.37 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 413 | 101.49 | humidity | 50 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 422 | 101.61 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 431 | 101.79 | humidity | 90 | 90 | < th | dose dependent | sin | 2 | NA |
| 433 | 101.79 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 441 | 101.90 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 522 | 102.37 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 524 | 102.39 | humidity | 80 | 90 | < th | dose independent | sin | 1 | NA |
| 552 | 102.56 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 15 |
| 568 | 102.72 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 15 |
| 576 | 102.81 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 12 |
| 678 | 102.92 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 714 | 103.13 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 18 |
| 743 | 103.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 16 |
| 799 | 103.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 805 | 103.73 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 818 | 103.79 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 838 | 103.91 | humidity | 70 | 30 | > th | dose independent | sin | 4 | NA |
| 850 | 103.99 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 854 | 104.01 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 997 | 104.26 | radiation | 20 | 90 | < th | dose independent | rect. | 19 | 23 |