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Os04g0583200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.21 (0.0482) R2 : 0.813
β1 : 0.0605 (0.177) R2dD : 4.69e-05 R2D : -0.00472
β2 : 5.27 (0.122) R2dC : 0.849 R2C : 0.641
β3 : 3.41 (0.205) R2dE : 0.126 R2E : -0.0925
β4 : -2.9 (0.455) R2dD*C : 0.017 R2D*C : 0.0109
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.821 (0.103) R2dN8 : 0.0361 R2N8 : 0.0293
σ : 0.901
deviance : 374.45
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_____
C
peak time of C : 1.65
E
wheather : humidity
threshold : 61
memory length : 9
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 8.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.54 0.893 8.21 0.121 5.36 3.34 -3.58 -2.69 0.823 1.7 59.92 10 12 8.05
374.45 0.901 8.21 0.0605 5.27 3.41 -2.9 -- 0.821 1.65 61 9 12 8.9
405.6 0.938 8.19 0.187 5.3 3.27 -- -1.19 0.877 1.63 62.02 10 12 8.03
407.7 0.94 8.19 0.169 5.26 3.24 -- -- 0.865 1.63 61.7 9 12 8.05
719.15 1.25 8.42 -1.35 -- 4.42 -- -0.832 -0.166 -- 34.53 799 17.5 1.48
538.51 1.09 8.24 0.013 4.68 -- -2.73 -- 0.795 0.763 -- -- -- --
570.1 1.12 8.23 0.114 4.69 -- -- -- 0.809 0.767 -- -- -- --
594.98 1.14 8.19 -0.224 -- 4.99 -- -- 0.799 -- 25.8 748 16.8 3.65
408.32 0.941 8.2 -- 5.26 3.22 -- -- 0.836 1.6 61.82 9 12 8.05
1944.83 2.06 8.15 0.284 -- -- -- -- 0.894 -- -- -- -- --
570.45 1.12 8.24 -- 4.69 -- -- -- 0.796 0.768 -- -- -- --
483.65 1.02 8.26 -- -- 5.06 -- -- 0.663 -- -44.98 844 14.3 6.28
1946.96 2.06 8.16 -- -- -- -- -- 0.862 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.30 humidity 60 10 > th dose dependent rect. 12 8
6 383.59 humidity 60 10 > th dose dependent rect. 8 12
11 387.35 humidity 50 10 > th dose dependent rect. 3 17
18 389.96 humidity 60 10 > th dose dependent rect. 10 10
21 393.10 radiation 1 10 < th dose dependent sin 23 NA
23 393.60 radiation 1 30 < th dose independent sin 23 NA
26 394.66 radiation 1 30 > th dose independent sin 23 NA
27 394.90 radiation 20 10 < th dose dependent rect. 13 23
29 395.53 radiation 20 10 < th dose dependent rect. 15 23
32 395.76 radiation 20 10 < th dose dependent rect. 11 23
34 395.84 radiation 20 10 < th dose dependent no NA NA
37 396.06 radiation 20 10 < th dose dependent rect. 1 23
38 396.18 humidity 60 30 > th dose dependent rect. 1 19
39 396.26 radiation 20 30 < th dose dependent rect. 21 23
44 397.39 radiation 1 90 < th dose dependent rect. 7 12
49 398.08 temperature 30 10 < th dose dependent rect. 13 7
53 398.44 radiation 20 30 < th dose dependent rect. 8 12
63 399.77 radiation 1 90 < th dose dependent rect. 10 9
69 400.19 radiation 1 90 < th dose independent rect. 7 12
77 401.10 humidity 80 10 > th dose independent rect. 3 17
100 403.52 radiation 10 10 > th dose independent rect. 9 23
103 403.76 humidity 60 10 > th dose dependent rect. 6 14
104 403.91 humidity 50 30 > th dose dependent rect. 21 23
112 404.75 radiation 1 90 < th dose independent rect. 10 9
122 405.51 humidity 50 10 > th dose dependent rect. 1 23
123 405.56 humidity 70 10 > th dose independent rect. 12 8
133 406.38 radiation 20 10 < th dose dependent rect. 9 23
148 407.54 radiation 20 10 < th dose dependent rect. 23 23
154 407.93 temperature 25 270 < th dose independent rect. 12 17
156 408.12 humidity 90 30 < th dose dependent rect. 20 22
158 408.27 humidity 60 10 > th dose dependent sin 22 NA
165 408.80 humidity 80 10 > th dose independent rect. 8 12
171 409.04 humidity 80 30 > th dose independent rect. 1 19
176 409.18 temperature 25 90 < th dose independent rect. 12 19
189 409.84 radiation 30 10 < th dose dependent rect. 3 17
191 409.95 humidity 90 10 < th dose dependent rect. 11 23
213 411.35 humidity 50 10 > th dose dependent rect. 23 23
215 411.38 temperature 25 90 < th dose independent rect. 13 8
224 411.94 humidity 90 10 < th dose dependent rect. 9 23
230 412.24 humidity 50 270 > th dose dependent rect. 23 21
245 413.17 humidity 50 10 > th dose dependent rect. 13 23
263 413.72 humidity 90 10 < th dose dependent sin 23 NA
303 414.83 radiation 1 10 < th dose dependent rect. 11 9
326 415.84 radiation 20 10 < th dose dependent rect. 3 23
367 416.90 humidity 90 10 < th dose dependent rect. 7 18
387 417.39 radiation 1 30 < th dose independent rect. 3 17
404 417.85 humidity 50 10 > th dose dependent no NA NA
423 418.25 radiation 10 10 > th dose independent rect. 11 23
429 418.34 radiation 1 10 < th dose dependent rect. 13 7
436 418.68 humidity 50 90 > th dose dependent rect. 12 23
438 418.87 humidity 90 10 < th dose dependent rect. 5 20
451 419.22 humidity 80 270 > th dose independent rect. 24 19
474 420.00 humidity 80 720 < th dose independent rect. 10 6
483 420.10 humidity 90 10 < th dose dependent rect. 7 23
530 421.42 humidity 90 10 < th dose dependent rect. 9 16
533 421.46 humidity 90 10 < th dose dependent rect. 2 23
552 421.97 radiation 20 10 < th dose dependent rect. 17 23
555 422.03 humidity 90 10 < th dose dependent rect. 7 11
572 422.30 humidity 90 10 < th dose dependent no NA NA
581 422.38 humidity 50 10 > th dose dependent rect. 15 23
596 422.88 humidity 90 10 < th dose dependent rect. 5 13
675 424.36 temperature 25 90 > th dose independent rect. 11 16
714 425.14 humidity 90 10 < th dose dependent rect. 9 21
757 426.04 humidity 90 10 < th dose dependent rect. 24 23
778 426.51 radiation 20 10 < th dose independent rect. 3 17
786 426.63 humidity 90 10 < th dose dependent rect. 11 21
805 427.02 radiation 1 10 < th dose dependent rect. 15 5
817 427.13 temperature 10 90 > th dose dependent rect. 11 14
872 428.19 humidity 80 10 > th dose independent sin 23 NA
942 429.35 humidity 90 10 < th dose dependent rect. 9 9
947 429.43 humidity 60 10 > th dose dependent rect. 3 23
950 429.49 humidity 90 10 < th dose dependent rect. 11 14
954 429.56 radiation 10 10 > th dose independent no NA NA
955 429.56 radiation 10 10 > th dose independent rect. 6 12