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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0582700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0341) R2 : 0.165
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.53 (0.169) R2dE : 0.154 R2E : 0.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0978 (0.0724) R2dN8 : 0.00457 R2N8 : 0.0109
σ : 0.638
deviance : 187.68
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 1.354
memory length : 2081
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.39 0.595 5.61 -0.0278 0.483 2.12 1.99 -3.67 -0.104 1.8 1.215 1728 -- --
161.45 0.592 5.56 0.172 0.468 1.4 2.13 -- -0.104 1.66 1.34 1618 -- --
175.77 0.617 5.61 -0.0377 0.482 2.1 -- -3.57 -0.106 1.42 1.22 1728 -- --
175.79 0.618 5.56 0.105 0.471 1.43 -- -- -0.11 1.45 1.329 1730 -- --
187.74 0.638 5.62 -0.143 -- 2.02 -- -3.41 -0.0943 -- 1.149 2081 -- --
184.03 0.636 5.58 0.439 0.514 -- 2.05 -- -0.16 1.35 -- -- -- --
201.05 0.664 5.58 0.369 0.512 -- -- -- -0.171 0.955 -- -- -- --
187.55 0.638 5.56 0.0746 -- 1.49 -- -- -0.0872 -- 1.354 2081 -- --
176.02 0.618 5.57 -- 0.479 1.43 -- -- -0.118 1.39 1.312 1730 -- --
217.39 0.689 5.57 0.388 -- -- -- -- -0.161 -- -- -- -- --
204.65 0.669 5.59 -- 0.518 -- -- -- -0.212 0.986 -- -- -- --
187.68 0.638 5.56 -- -- 1.53 -- -- -0.0978 -- 1.354 2081 -- --
221.37 0.694 5.58 -- -- -- -- -- -0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.96 atmosphere 995.0 30 > th dose dependent rect. 8 11
5 161.65 precipitation 0.1 1440 > th dose dependent rect. 15 10
17 162.15 precipitation 0.1 1440 > th dose independent rect. 16 4
31 162.53 precipitation 0.1 1440 < th dose independent rect. 16 5
32 162.53 precipitation 0.1 1440 < th dose dependent rect. 16 5
44 162.86 precipitation 0.1 1440 > th dose dependent rect. 4 14
54 163.02 precipitation 0.1 1440 > th dose independent rect. 16 9
55 163.06 precipitation 0.1 1440 < th dose independent rect. 16 8
56 163.06 precipitation 0.1 1440 < th dose dependent rect. 16 8
63 163.16 precipitation 0.1 1440 > th dose dependent rect. 7 12
71 163.24 precipitation 0.1 1440 < th dose independent rect. 16 3
72 163.24 precipitation 0.1 1440 < th dose dependent rect. 16 3
77 163.30 precipitation 0.1 1440 < th dose independent rect. 14 5
78 163.30 precipitation 0.1 1440 < th dose dependent rect. 14 5
141 163.86 temperature 20.0 30 > th dose dependent rect. 2 6
150 164.00 precipitation 0.1 1440 > th dose dependent sin 18 NA
185 164.60 atmosphere 1000.0 30 > th dose independent rect. 8 11
208 164.82 precipitation 0.1 1440 < th dose independent rect. 7 11
209 164.82 precipitation 0.1 1440 < th dose dependent rect. 7 11
218 164.94 precipitation 0.1 1440 > th dose independent rect. 7 11
236 165.16 precipitation 0.1 43200 > th dose dependent rect. 17 1
238 165.17 precipitation 0.1 1440 > th dose dependent rect. 1 17
241 165.19 precipitation 0.1 43200 > th dose dependent rect. 17 3
258 165.38 temperature 25.0 720 > th dose dependent rect. 8 1
264 165.53 precipitation 0.1 1440 > th dose dependent rect. 8 17
269 165.60 atmosphere 1005.0 270 > th dose independent rect. 7 10
272 165.65 wind 9.0 14400 > th dose dependent rect. 16 2
275 165.68 precipitation 0.1 43200 > th dose independent rect. 17 1
279 165.70 temperature 25.0 10 > th dose independent rect. 19 13
300 165.90 temperature 25.0 720 > th dose independent rect. 19 7
311 165.96 wind 1.0 14400 > th dose independent rect. 24 3
312 165.98 temperature 25.0 30 > th dose independent rect. 4 4
323 166.08 temperature 25.0 10 > th dose independent rect. 1 7
324 166.08 atmosphere 1000.0 30 > th dose independent rect. 8 9
337 166.17 temperature 25.0 720 > th dose dependent rect. 2 7
354 166.28 precipitation 0.1 43200 < th dose independent rect. 17 1
357 166.28 precipitation 0.1 43200 < th dose dependent rect. 17 1
362 166.30 temperature 20.0 270 > th dose dependent rect. 2 2
382 166.48 wind 1.0 14400 < th dose independent rect. 2 8
383 166.49 wind 1.0 14400 > th dose independent rect. 2 8
388 166.51 wind 1.0 14400 > th dose independent rect. 24 10
396 166.53 wind 1.0 14400 > th dose independent rect. 24 8
397 166.54 temperature 25.0 720 > th dose independent rect. 20 4
406 166.61 wind 1.0 14400 < th dose dependent rect. 2 6
407 166.62 wind 1.0 14400 < th dose independent rect. 24 8
411 166.67 temperature 20.0 10 > th dose dependent rect. 19 13
421 166.72 wind 1.0 14400 < th dose dependent rect. 2 8
426 166.75 wind 1.0 14400 < th dose independent rect. 24 10
431 166.79 wind 1.0 14400 < th dose dependent rect. 4 4
435 166.81 temperature 25.0 270 > th dose independent rect. 24 7
438 166.84 temperature 30.0 30 < th dose independent rect. 8 11
441 166.85 wind 1.0 14400 < th dose independent rect. 4 4
444 166.87 wind 1.0 14400 < th dose independent rect. 4 6
459 166.94 wind 1.0 14400 < th dose independent rect. 5 2
465 166.98 wind 1.0 14400 > th dose independent rect. 4 6
467 166.99 wind 9.0 14400 > th dose dependent rect. 16 5
482 167.12 precipitation 0.1 14400 > th dose dependent rect. 6 12
488 167.17 temperature 25.0 720 > th dose independent rect. 8 1
494 167.22 wind 1.0 14400 > th dose independent rect. 4 4
508 167.27 wind 1.0 14400 < th dose independent rect. 1 2
519 167.32 wind 9.0 14400 > th dose independent rect. 17 1
534 167.39 wind 1.0 14400 < th dose dependent rect. 4 6
551 167.46 temperature 25.0 720 > th dose independent rect. 20 2
559 167.50 humidity 50.0 14400 > th dose independent rect. 14 4
567 167.53 atmosphere 1000.0 720 > th dose dependent rect. 7 2
572 167.55 humidity 50.0 14400 > th dose independent rect. 14 16
589 167.58 humidity 50.0 14400 > th dose independent rect. 14 13
609 167.63 humidity 50.0 14400 > th dose independent sin 14 NA
620 167.67 wind 9.0 14400 < th dose independent rect. 17 1
648 167.74 wind 1.0 14400 > th dose independent rect. 5 2
671 167.84 humidity 50.0 14400 > th dose independent rect. 15 1
679 167.89 humidity 50.0 14400 < th dose independent sin 13 NA
745 168.16 precipitation 0.1 1440 > th dose independent sin 18 NA
749 168.17 humidity 50.0 14400 < th dose independent rect. 14 4
794 168.28 atmosphere 1010.0 90 < th dose dependent rect. 5 16
811 168.36 wind 9.0 14400 > th dose dependent rect. 17 18
820 168.41 humidity 60.0 14400 > th dose independent rect. 10 1
826 168.43 wind 1.0 14400 > th dose independent sin 7 NA
839 168.46 wind 1.0 4320 < th dose dependent rect. 18 1
881 168.55 precipitation 0.1 1440 < th dose independent sin 18 NA
883 168.55 precipitation 0.1 1440 < th dose dependent sin 18 NA
900 168.61 wind 1.0 14400 < th dose independent sin 7 NA
914 168.65 temperature 10.0 10 > th dose dependent rect. 19 13
926 168.70 temperature 30.0 270 < th dose independent rect. 22 23
936 168.72 humidity 60.0 4320 < th dose independent rect. 12 1
993 168.83 atmosphere 1015.0 10 < th dose dependent rect. 6 15
994 168.84 temperature 30.0 30 < th dose independent rect. 8 9