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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0582600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.031) R2 : 0.488
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.65 (0.079) R2dC : 0.491 R2C : 0.487
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0352 (0.065) R2dN8 : 0.000425 R2N8 : -0.00329
σ : 0.583
deviance : 155.37
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.84 0.563 4.22 0.403 1.47 0.284 0.0958 4.13 0.11 20.2 30.19 510 -- --
144.35 0.56 4.24 0.16 1.47 0.675 -0.0384 -- 0.142 20.1 29.9 531 -- --
143.83 0.559 4.22 0.459 1.46 0.184 -- 5.12 0.103 20.2 30.6 509 -- --
144.08 0.559 4.26 0.119 1.46 0.742 -- -- 0.111 20.2 29.97 517 -- --
234.35 0.713 4.24 -0.282 -- 1.91 -- -2.3 0.0695 -- 27.82 568 -- --
153.6 0.581 4.27 0.214 1.65 -- 0.49 -- 0.0572 19.9 -- -- -- --
154.3 0.582 4.27 0.201 1.65 -- -- -- 0.0576 20 -- -- -- --
230.67 0.707 4.26 -0.102 -- 1.58 -- -- -0.0949 -- 24.66 544 -- --
144.43 0.56 4.26 -- 1.45 0.758 -- -- 0.101 20.2 29.81 517 -- --
302.47 0.813 4.23 0.184 -- -- -- -- 0.0361 -- -- -- -- --
155.37 0.583 4.28 -- 1.65 -- -- -- 0.0352 20 -- -- -- --
230.94 0.708 4.26 -- -- 1.56 -- -- -0.0809 -- 24.7 543 -- --
303.36 0.813 4.24 -- -- -- -- -- 0.0157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.07 wind 1.0 720 > th dose dependent rect. 11 1
2 137.21 wind 3.0 720 > th dose independent rect. 11 1
3 137.83 temperature 25.0 90 > th dose dependent rect. 2 2
4 137.86 atmosphere 1005.0 270 > th dose dependent rect. 23 6
6 138.00 temperature 25.0 90 > th dose independent rect. 1 3
7 138.20 temperature 15.0 30 > th dose independent rect. 3 23
8 138.62 temperature 25.0 90 > th dose dependent rect. 1 4
17 139.27 temperature 25.0 270 > th dose independent rect. 2 1
25 140.29 temperature 20.0 10 > th dose dependent rect. 16 9
32 140.76 atmosphere 1005.0 30 > th dose dependent rect. 2 1
34 140.83 atmosphere 1005.0 30 > th dose independent rect. 2 1
37 140.87 wind 3.0 30 < th dose dependent rect. 2 1
38 140.89 atmosphere 1005.0 270 > th dose dependent rect. 2 1
42 140.92 wind 3.0 30 < th dose independent rect. 2 1
45 140.93 temperature 25.0 30 < th dose independent rect. 2 1
49 140.95 humidity 80.0 30 > th dose independent rect. 2 1
54 140.98 humidity 70.0 30 > th dose dependent rect. 2 1
60 141.01 temperature 10.0 30 > th dose independent rect. 2 1
63 141.01 humidity 50.0 30 > th dose independent rect. 2 1
68 141.01 atmosphere 1010.0 30 < th dose independent rect. 2 1
70 141.01 radiation 1.0 30 < th dose independent rect. 2 1
75 141.01 precipitation 0.1 30 < th dose independent rect. 2 1
77 141.01 radiation 1.0 30 < th dose dependent rect. 2 1
82 141.01 precipitation 0.1 30 < th dose dependent rect. 2 1
84 141.05 atmosphere 1000.0 30 > th dose independent rect. 3 23
89 141.21 temperature 30.0 30 < th dose dependent rect. 2 1
92 141.24 atmosphere 1015.0 30 < th dose dependent rect. 2 1
95 141.38 wind 1.0 30 > th dose independent rect. 2 1
102 141.47 temperature 15.0 270 > th dose dependent rect. 13 10
120 141.72 wind 5.0 720 < th dose independent rect. 6 8
146 141.80 temperature 30.0 720 < th dose independent rect. 10 2
158 141.85 precipitation 0.1 30 < th dose independent rect. 3 23
159 141.85 wind 9.0 720 < th dose dependent rect. 6 8
160 141.85 precipitation 0.1 30 < th dose dependent rect. 3 23
166 141.93 wind 9.0 720 < th dose independent rect. 15 9
170 141.98 atmosphere 1005.0 10 > th dose dependent rect. 2 3
172 142.06 atmosphere 1015.0 30 < th dose independent rect. 3 23
184 142.29 temperature 30.0 90 > th dose independent rect. 12 7
199 142.33 temperature 30.0 720 < th dose independent rect. 24 12
205 142.43 wind 9.0 720 < th dose independent rect. 12 15
209 142.50 humidity 50.0 30 > th dose independent rect. 3 23
211 142.56 temperature 20.0 10 > th dose dependent rect. 13 7
212 142.62 temperature 30.0 90 < th dose independent rect. 3 23
218 142.67 temperature 25.0 4320 > th dose independent rect. 1 1
220 142.68 temperature 20.0 30 > th dose dependent rect. 17 5
221 142.69 temperature 20.0 30 > th dose dependent rect. 17 3
222 142.70 wind 9.0 1440 < th dose independent rect. 3 1
223 142.70 temperature 10.0 1440 > th dose independent rect. 3 1
226 142.70 temperature 30.0 1440 < th dose independent rect. 3 1
230 142.70 humidity 50.0 1440 > th dose independent rect. 3 1
239 142.70 atmosphere 995.0 1440 > th dose independent rect. 3 1
240 142.70 radiation 1.0 1440 < th dose independent rect. 3 1
260 142.70 wind 9.0 30 < th dose independent rect. 3 23
261 142.70 temperature 10.0 1440 > th dose independent rect. 4 23
264 142.70 radiation 1.0 1440 < th dose dependent rect. 3 1
269 142.70 temperature 20.0 10 > th dose dependent rect. 13 9
276 142.72 radiation 30.0 43200 < th dose dependent rect. 3 1
312 142.89 temperature 30.0 90 < th dose independent rect. 10 13
324 143.01 temperature 30.0 720 < th dose independent rect. 3 9
351 143.17 temperature 25.0 90 > th dose dependent rect. 16 18
379 143.32 temperature 30.0 720 < th dose independent rect. 19 17
385 143.34 temperature 25.0 1440 < th dose independent rect. 1 1
419 143.54 wind 5.0 720 < th dose dependent rect. 12 1
421 143.55 temperature 30.0 90 < th dose independent sin 17 NA
422 143.55 temperature 30.0 270 > th dose independent rect. 14 4
424 143.55 atmosphere 1005.0 30 > th dose dependent rect. 15 8
437 143.62 wind 5.0 720 < th dose independent rect. 12 1
439 143.64 temperature 30.0 270 < th dose independent rect. 24 23
448 143.68 wind 5.0 720 < th dose independent rect. 6 12
475 143.78 temperature 30.0 270 < th dose independent rect. 8 14
480 143.79 atmosphere 995.0 720 > th dose independent rect. 24 15
484 143.80 temperature 25.0 10 > th dose dependent rect. 16 15
492 143.83 temperature 30.0 90 > th dose independent sin 15 NA
495 143.83 wind 5.0 90 < th dose independent rect. 12 22
506 143.88 temperature 30.0 270 > th dose independent rect. 15 1
523 143.93 wind 7.0 30 < th dose independent rect. 23 23
573 144.03 temperature 30.0 720 < th dose independent rect. 5 7
587 144.03 temperature 25.0 10 > th dose dependent rect. 13 18
588 144.04 wind 5.0 720 < th dose independent rect. 22 16
593 144.06 temperature 20.0 10 > th dose independent rect. 20 6
598 144.08 temperature 30.0 270 < th dose independent sin 19 NA
600 144.08 temperature 20.0 30 > th dose independent rect. 10 16
629 144.11 atmosphere 995.0 30 > th dose dependent rect. 23 11
630 144.11 temperature 25.0 90 > th dose dependent rect. 12 19
637 144.13 temperature 25.0 10 > th dose dependent rect. 13 16
641 144.15 temperature 10.0 270 > th dose dependent sin 18 NA
653 144.18 temperature 25.0 30 > th dose dependent sin 11 NA
663 144.21 temperature 10.0 720 > th dose independent rect. 15 9
664 144.21 temperature 10.0 720 > th dose independent rect. 24 15
668 144.22 temperature 25.0 90 > th dose dependent rect. 12 15
675 144.24 temperature 30.0 270 < th dose independent rect. 9 20
678 144.24 temperature 25.0 90 > th dose dependent rect. 12 17
689 144.26 temperature 30.0 270 < th dose independent rect. 15 13
695 144.26 wind 9.0 720 < th dose dependent rect. 6 12
702 144.28 temperature 30.0 270 < th dose independent rect. 10 18
704 144.28 temperature 30.0 270 < th dose independent rect. 8 22
723 144.33 temperature 25.0 10 > th dose independent rect. 13 7
724 144.33 atmosphere 1000.0 30 > th dose independent rect. 10 13
729 144.33 temperature 25.0 10 > th dose dependent rect. 13 21
738 144.36 temperature 30.0 720 > th dose dependent rect. 11 3
742 144.37 temperature 30.0 720 > th dose dependent rect. 12 1
764 144.39 temperature 10.0 720 > th dose independent rect. 3 9
765 144.39 atmosphere 995.0 720 > th dose independent rect. 3 9
766 144.39 temperature 10.0 720 > th dose independent rect. 12 15
778 144.42 wind 5.0 720 < th dose independent sin 3 NA
790 144.44 wind 5.0 720 < th dose independent rect. 2 16
797 144.45 temperature 30.0 720 > th dose independent rect. 11 3
798 144.45 temperature 30.0 720 > th dose independent rect. 9 5
840 144.52 wind 5.0 720 < th dose independent rect. 22 20
869 144.54 temperature 15.0 10 > th dose dependent rect. 6 14
901 144.57 temperature 10.0 10 > th dose dependent sin 16 NA
964 144.66 temperature 30.0 720 > th dose dependent sin 6 NA