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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0581700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0552) R2 : 0.51
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.32 (0.175) R2dC : 0.0952 R2C : 0.269
β3 : 2.36 (0.201) R2dE : 0.232 R2E : 0.409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.289 (0.116) R2dN8 : 0.00857 R2N8 : 0.00512
σ : 1.03
deviance : 493.34
__
_____
C
peak time of C : 20.1
E
wheather : humidity
threshold : 13.22
memory length : 50
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.5
open length of G : 6.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.39 1.02 4.04 0.405 1.35 2.4 1.25 2.03 0.332 20 24.47 14 13.9 6.35
473.62 1.01 4.05 0.407 1.38 2.3 2.38 -- 0.329 19.7 18.54 40 13.6 6.38
470.4 1.01 4.04 0.375 1.33 2.42 -- 2.84 0.329 20 23.12 13 13.9 6.44
490.14 1.03 4.03 0.378 1.4 2.32 -- -- 0.326 19.9 17.15 51 13.5 6.66
528.72 1.07 3.99 0.35 -- 3.31 -- 2.98 0.341 -- 17.56 14 13.9 6.69
571.94 1.12 4.07 0.432 2.78 -- 2.69 -- 0.351 18.9 -- -- -- --
590.51 1.14 4.07 0.385 2.79 -- -- -- 0.358 18.9 -- -- -- --
547.6 1.09 4.01 0.367 -- 3.2 -- -- 0.269 -- 4.448 66 13.4 6.68
493.34 1.03 4.05 -- 1.32 2.36 -- -- 0.289 20.1 13.22 50 13.5 6.68
997.42 1.48 4.01 0.325 -- -- -- -- 0.305 -- -- -- -- --
594.43 1.14 4.08 -- 2.78 -- -- -- 0.316 18.9 -- -- -- --
550.61 1.09 4.03 -- -- 3.17 -- -- 0.223 -- -0.1225 70 13.4 6.63
1000.21 1.48 4.02 -- -- -- -- -- 0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 478.56 temperature 30.0 30 < th dose independent rect. 13 7
7 486.40 humidity 50.0 30 > th dose dependent rect. 13 7
8 486.76 wind 1.0 30 > th dose independent rect. 13 7
12 488.00 humidity 60.0 90 > th dose independent rect. 13 7
14 488.83 radiation 20.0 43200 < th dose dependent rect. 21 7
16 489.00 wind 5.0 30 < th dose independent rect. 20 7
21 489.26 wind 9.0 30 < th dose independent rect. 3 17
24 489.73 wind 9.0 90 < th dose independent rect. 13 7
33 491.52 temperature 10.0 30 > th dose independent rect. 20 7
34 491.52 temperature 30.0 30 < th dose independent rect. 20 7
35 491.52 humidity 50.0 30 > th dose independent rect. 20 7
38 491.52 atmosphere 995.0 30 > th dose independent rect. 20 7
39 491.52 radiation 1.0 30 < th dose independent rect. 20 7
44 491.52 temperature 10.0 30 > th dose independent rect. 3 17
46 491.52 atmosphere 1015.0 30 < th dose independent rect. 3 17
47 491.52 radiation 10.0 30 < th dose dependent rect. 20 7
52 491.62 radiation 20.0 43200 < th dose dependent rect. 21 5
55 492.13 radiation 40.0 30 < th dose independent rect. 12 8
56 492.21 precipitation 0.1 90 < th dose independent rect. 20 17
57 492.21 precipitation 0.1 90 < th dose dependent rect. 20 17
61 492.70 temperature 10.0 90 > th dose independent rect. 13 7
63 492.70 atmosphere 1010.0 90 < th dose independent rect. 13 7
65 492.70 temperature 10.0 90 > th dose independent rect. 20 17
66 492.70 atmosphere 995.0 90 > th dose independent rect. 20 17
67 492.90 precipitation 0.1 30 < th dose independent rect. 20 7
68 492.90 precipitation 0.1 30 < th dose dependent rect. 20 7
73 493.46 humidity 50.0 90 > th dose independent rect. 20 17
74 493.54 temperature 10.0 1440 > th dose independent rect. 14 7
77 493.54 temperature 10.0 1440 > th dose independent rect. 21 17
80 493.54 atmosphere 995.0 1440 > th dose independent rect. 21 17
84 493.93 humidity 50.0 30 > th dose dependent rect. 1 19
85 493.96 atmosphere 995.0 30 > th dose independent rect. 3 17
87 494.16 wind 9.0 90 < th dose independent rect. 20 17
108 494.45 atmosphere 995.0 90 > th dose independent rect. 13 7
127 495.23 humidity 60.0 30 > th dose dependent rect. 18 2
139 495.83 atmosphere 995.0 30 > th dose dependent rect. 14 6
141 495.86 humidity 50.0 30 > th dose dependent rect. 3 17
145 496.17 temperature 30.0 30 < th dose independent rect. 3 17
167 496.68 wind 9.0 90 < th dose independent rect. 1 19
169 496.76 radiation 1.0 90 < th dose dependent rect. 3 17
171 496.79 radiation 1.0 1440 < th dose dependent rect. 21 7
172 497.04 radiation 1.0 90 < th dose independent rect. 1 19
174 497.12 radiation 1.0 90 < th dose dependent rect. 1 19
182 497.59 temperature 10.0 1440 > th dose independent rect. 21 7
185 497.59 temperature 30.0 1440 < th dose independent rect. 21 7
189 497.59 humidity 50.0 1440 > th dose independent rect. 21 7
195 497.59 atmosphere 995.0 1440 > th dose independent rect. 21 7
196 497.59 radiation 1.0 1440 < th dose independent rect. 21 7
216 497.59 temperature 10.0 1440 > th dose independent rect. 4 17
238 498.41 atmosphere 1015.0 30 < th dose independent rect. 20 7
251 498.70 radiation 1.0 1440 < th dose dependent rect. 21 5
253 498.80 radiation 1.0 90 < th dose independent rect. 3 17
257 498.99 temperature 10.0 30 > th dose dependent rect. 20 7
274 499.34 temperature 10.0 1440 > th dose independent rect. 21 5
277 499.34 temperature 30.0 1440 < th dose independent rect. 21 5
281 499.34 humidity 50.0 1440 > th dose independent rect. 21 5
287 499.34 atmosphere 995.0 1440 > th dose independent rect. 21 5
288 499.34 radiation 1.0 1440 < th dose independent rect. 21 5
308 499.34 temperature 10.0 1440 > th dose independent rect. 2 19
317 499.63 temperature 30.0 30 < th dose independent rect. 1 19
327 500.03 temperature 15.0 90 > th dose independent rect. 1 19
348 500.34 wind 9.0 10 < th dose dependent rect. 20 7
350 500.44 radiation 1.0 270 < th dose independent rect. 22 22
351 500.46 precipitation 0.1 30 < th dose independent rect. 3 17
352 500.46 precipitation 0.1 30 < th dose dependent rect. 3 17
353 500.47 wind 9.0 90 < th dose independent rect. 20 5
354 500.48 temperature 10.0 90 > th dose independent rect. 20 5
355 500.48 temperature 30.0 90 < th dose independent rect. 20 5
356 500.48 humidity 50.0 90 > th dose independent rect. 20 5
359 500.48 atmosphere 995.0 90 > th dose independent rect. 20 5
360 500.48 radiation 1.0 90 < th dose independent rect. 20 5
366 500.48 atmosphere 1015.0 90 < th dose independent rect. 1 19
367 500.48 radiation 10.0 90 < th dose dependent rect. 20 5
417 501.37 precipitation 0.1 90 < th dose independent rect. 13 7
418 501.37 precipitation 0.1 90 < th dose dependent rect. 13 7
420 501.48 precipitation 0.1 90 < th dose independent rect. 20 5
421 501.48 precipitation 0.1 90 < th dose dependent rect. 20 5
422 501.49 wind 9.0 270 < th dose independent rect. 21 23
423 501.56 humidity 90.0 90 < th dose independent rect. 20 17
432 501.76 radiation 1.0 270 < th dose dependent rect. 22 22
439 501.81 precipitation 0.1 10 < th dose independent rect. 13 7
440 501.81 precipitation 0.1 10 < th dose dependent rect. 13 7
447 501.95 wind 7.0 270 < th dose independent rect. 20 1
450 501.98 atmosphere 1015.0 90 < th dose independent rect. 20 17
467 502.36 atmosphere 995.0 30 > th dose independent rect. 1 19
486 502.75 temperature 10.0 270 > th dose independent rect. 20 1
487 502.75 temperature 30.0 270 < th dose independent rect. 20 1
488 502.75 humidity 50.0 270 > th dose independent rect. 20 1
491 502.75 atmosphere 995.0 270 > th dose independent rect. 20 1
492 502.75 radiation 1.0 270 < th dose independent rect. 20 1
497 502.75 temperature 10.0 270 > th dose independent rect. 21 23
498 502.75 radiation 1.0 270 < th dose dependent rect. 20 1
653 503.60 humidity 90.0 270 < th dose independent rect. 20 1
658 503.72 precipitation 0.1 270 < th dose independent rect. 20 1
659 503.72 precipitation 0.1 270 < th dose dependent rect. 20 1
664 503.85 temperature 30.0 10 < th dose dependent rect. 18 2
698 504.36 wind 1.0 30 > th dose independent rect. 20 7
710 504.60 wind 9.0 270 < th dose dependent rect. 20 1
720 504.97 wind 1.0 270 > th dose independent rect. 20 1
729 505.15 atmosphere 1015.0 30 < th dose independent rect. 20 5
732 505.18 temperature 10.0 30 > th dose dependent rect. 20 5
738 505.37 temperature 10.0 270 > th dose dependent rect. 20 1
743 505.42 humidity 50.0 30 > th dose dependent rect. 20 7
756 505.61 atmosphere 1015.0 270 < th dose independent rect. 20 1
829 507.01 wind 9.0 10 < th dose dependent rect. 20 5
847 507.76 wind 9.0 90 < th dose dependent rect. 13 7
850 507.91 humidity 80.0 30 > th dose independent rect. 1 19
851 507.92 radiation 1.0 4320 < th dose dependent rect. 19 2
855 507.97 humidity 50.0 30 > th dose dependent rect. 20 5
866 508.18 humidity 70.0 10 > th dose independent rect. 18 2
886 508.70 humidity 80.0 30 > th dose independent rect. 3 17
893 508.86 wind 1.0 10 > th dose independent rect. 2 18
895 508.89 wind 1.0 90 > th dose independent rect. 20 17
899 508.96 radiation 10.0 10 < th dose dependent rect. 3 14
908 509.09 temperature 30.0 30 < th dose independent rect. 18 2
914 509.16 precipitation 0.1 30 < th dose independent rect. 1 19
915 509.16 precipitation 0.1 30 < th dose dependent rect. 1 19
922 509.31 humidity 50.0 90 > th dose independent rect. 1 19
943 509.74 atmosphere 995.0 270 > th dose independent rect. 22 22
961 509.96 humidity 50.0 30 > th dose independent rect. 3 17
963 510.06 humidity 50.0 270 > th dose independent rect. 23 21