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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0581100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isopenicillin N synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0803) R2 : 0.385
β1 : 0.0755 (0.297) R2dD : 9.28e-05 R2D : -0.0392
β2 : 3.2 (0.229) R2dC : 0.367 R2C : 0.0575
β3 : -1.85 (0.178) R2dE : 0.202 R2E : -0.123
β4 : -3.91 (0.896) R2dD*C : 0.0354 R2D*C : -0.035
β5 : 3.06 (0.74) R2dD*E : 0.0314 R2D*E : -0.046
γ1 : 1.24 (0.171) R2dN8 : 0.0951 R2N8 : 0.0745
σ : 1.51
deviance : 1034.72
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C
peak time of C : 9.87
E
wheather : humidity
threshold : 71.44
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.93
open length of G : 13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1034.72 1.51 4.85 0.0755 3.2 -1.85 -3.91 3.06 1.24 9.87 71.44 10 2.93 13
1073.58 1.53 4.87 -0.0661 3.21 -1.86 -2.09 -- 1.21 9.87 71.49 10 2.95 13
1083.06 1.54 4.83 -0.0589 3.18 -1.81 -- 1.28 1.33 9.7 71.44 10 2.93 13
1088.14 1.54 4.84 -0.0939 3.22 -1.86 -- -- 1.31 9.71 71 9 2.93 13
1483.2 1.79 4.9 -0.187 -- -0.888 -- 1.27 1.26 -- 84 11 2.84 13
1223.95 1.64 4.89 -0.0171 2.19 -- -2.37 -- 1.29 12.2 -- -- -- --
1248.05 1.65 4.89 -0.112 2.2 -- -- -- 1.28 12.1 -- -- -- --
1476.38 1.79 4.96 -0.13 -- -0.927 -- -- 1.17 -- 85 13 1.8 13.4
1088.31 1.54 4.84 -- 3.22 -1.86 -- -- 1.28 9.74 71.19 9 2.93 13
1552.31 1.84 4.94 -0.181 -- -- -- -- 1.25 -- -- -- -- --
1248.39 1.65 4.89 -- 2.2 -- -- -- 1.29 12.1 -- -- -- --
1474.75 1.79 4.95 -- -- -0.945 -- -- 1.18 -- 84 11 1.72 14.2
1553.18 1.84 4.93 -- -- -- -- -- 1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1051.80 humidity 70 270 > th dose dependent rect. 23 15
3 1052.61 humidity 70 10 > th dose independent rect. 3 13
5 1053.08 humidity 90 10 < th dose dependent rect. 20 18
11 1054.00 humidity 70 10 < th dose independent rect. 7 7
23 1054.13 humidity 60 10 > th dose dependent sin 3 NA
24 1054.18 humidity 70 90 < th dose independent rect. 7 7
50 1055.23 humidity 70 30 < th dose independent rect. 11 3
52 1055.81 humidity 90 10 < th dose dependent rect. 6 8
54 1056.43 humidity 90 30 < th dose dependent rect. 23 15
57 1056.64 humidity 90 30 < th dose dependent rect. 1 13
71 1058.48 humidity 70 90 < th dose independent rect. 9 5
79 1059.00 humidity 90 270 < th dose dependent rect. 6 7
117 1061.70 humidity 70 10 > th dose independent sin 4 NA
147 1064.44 humidity 90 30 < th dose dependent rect. 9 5
168 1065.22 humidity 80 270 > th dose independent rect. 24 14
273 1069.71 humidity 90 10 < th dose dependent sin 4 NA
380 1072.65 humidity 70 10 < th dose independent sin 4 NA
387 1072.90 humidity 80 270 < th dose independent sin 6 NA
503 1077.00 humidity 90 270 < th dose dependent sin 7 NA
516 1077.43 humidity 60 10 > th dose dependent rect. 3 12
559 1078.71 humidity 70 10 > th dose independent rect. 24 15
844 1086.65 radiation 20 10 > th dose independent rect. 16 22
877 1087.31 radiation 20 10 > th dose independent rect. 7 7
993 1090.15 humidity 80 30 < th dose dependent rect. 11 3