Os04g0581000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Flavanone 3-hydroxylase-like protein.
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Os04g0581000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Flavanone 3-hydroxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 368.85 | 0.902 | 8.38 | 5.96 | 1.21 | -0.641 | -0.426 | 6.03 | 0.978 | 2.67 | 0.2547 | 4767 | -- | -- |
| 383.95 | 0.913 | 8.47 | 5.85 | 1.27 | 0.843 | -0.558 | -- | 1.09 | 2.9 | 0.5951 | 2310 | -- | -- |
| 369.37 | 0.895 | 8.36 | 6.05 | 1.22 | -0.789 | -- | 6.55 | 0.996 | 2.71 | 0.3152 | 4763 | -- | -- |
| 375.51 | 0.903 | 8.48 | 5.68 | 1.27 | 1.03 | -- | -- | 1.1 | 2.65 | 1.045 | 14164 | -- | -- |
| 454.02 | 0.992 | 8.35 | 6.03 | -- | -0.783 | -- | 6.81 | 1 | -- | 0.2938 | 4850 | -- | -- |
| 399.53 | 0.937 | 8.5 | 6.06 | 1.25 | -- | -0.318 | -- | 0.996 | 2.63 | -- | -- | -- | -- |
| 399.88 | 0.936 | 8.49 | 6.07 | 1.24 | -- | -- | -- | 0.998 | 2.63 | -- | -- | -- | -- |
| 465.84 | 1.01 | 8.47 | 5.72 | -- | 1.05 | -- | -- | 1.11 | -- | 1 | 14053 | -- | -- |
| 846.09 | 1.35 | 8.48 | -- | 1.41 | 3.01 | -- | -- | 1.07 | 2.7 | 1.376 | 47520 | -- | -- |
| 490.41 | 1.03 | 8.49 | 6.12 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 1370.87 | 1.73 | 8.65 | -- | 1.36 | -- | -- | -- | 0.322 | 2.68 | -- | -- | -- | -- |
| 961.3 | 1.44 | 8.47 | -- | -- | 2.98 | -- | -- | 1.09 | -- | 1.381 | 47520 | -- | -- |
| 1479.25 | 1.8 | 8.64 | -- | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 363.40 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 4 | 364.12 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 27 | 365.01 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 34 | 365.15 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 37 | 365.18 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 40 | 365.20 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 57 | 365.45 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 69 | 365.51 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 103 | 365.73 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 105 | 365.75 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 108 | 365.75 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 7 | 11 |
| 130 | 365.88 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 145 | 365.95 | atmosphere | 1e+03 | 14400 | < th | dose independent | sin | 5 | NA |
| 150 | 365.98 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 160 | 366.01 | atmosphere | 1e+03 | 14400 | > th | dose independent | sin | 5 | NA |
| 162 | 366.01 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 166 | 366.01 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 193 | 366.13 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 194 | 366.13 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 201 | 366.16 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 203 | 366.16 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 208 | 366.17 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 239 | 366.33 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 249 | 366.37 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 250 | 366.37 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 4 | 14 |
| 289 | 366.52 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 330 | 366.71 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 361 | 366.84 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 362 | 366.84 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 368 | 366.85 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 392 | 366.96 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 407 | 367.03 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 444 | 367.13 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 445 | 367.13 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 462 | 367.17 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 484 | 367.23 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 4 | 15 |
| 568 | 367.57 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 583 | 367.63 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 585 | 367.63 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 592 | 367.68 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 708 | 368.02 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 718 | 368.05 | atmosphere | 1e+03 | 14400 | < th | dose independent | no | NA | NA |
| 755 | 368.17 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 764 | 368.20 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 790 | 368.25 | precipitation | 1e-01 | 4320 | > th | dose dependent | sin | 0 | NA |
| 847 | 368.41 | atmosphere | 1e+03 | 14400 | > th | dose independent | no | NA | NA |
| 871 | 368.48 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 894 | 368.57 | wind | 7e+00 | 43200 | < th | dose independent | sin | 13 | NA |
| 897 | 368.57 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 904 | 368.59 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 907 | 368.60 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 941 | 368.68 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 11 | 8 |
| 963 | 368.79 | wind | 7e+00 | 43200 | > th | dose independent | sin | 13 | NA |
| 966 | 368.79 | atmosphere | 1e+03 | 14400 | < th | dose dependent | sin | 22 | NA |