FiT-DB / Search/ Help/ Sample detail
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Os04g0580400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2 I (EC 6.3.2.19) (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO- 1 conjugating enzyme) (Ubiquitin carrier protein 9) (p18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.22 | 0.686 | 6.47 | -3.37 | 0.565 | 1.35 | -0.448 | 0.734 | -0.967 | 9.61 | 85.03 | 1429 | -- | -- |
| 214.03 | 0.681 | 6.47 | -3.42 | 0.568 | 1.39 | -0.412 | -- | -0.971 | 9.59 | 85 | 1421 | -- | -- |
| 213.94 | 0.681 | 6.47 | -3.39 | 0.573 | 1.36 | -- | 0.734 | -0.971 | 9.66 | 85 | 1413 | -- | -- |
| 214.71 | 0.682 | 6.47 | -3.46 | 0.566 | 1.43 | -- | -- | -0.974 | 9.49 | 85 | 1429 | -- | -- |
| 232.26 | 0.71 | 6.48 | -3.37 | -- | 1.35 | -- | 0.732 | -0.949 | -- | 85 | 1483 | -- | -- |
| 262.93 | 0.76 | 6.48 | -3.25 | 0.562 | -- | -0.565 | -- | -1.01 | 9.24 | -- | -- | -- | -- |
| 264.02 | 0.761 | 6.48 | -3.28 | 0.568 | -- | -- | -- | -1.01 | 9.05 | -- | -- | -- | -- |
| 232.57 | 0.71 | 6.49 | -3.46 | -- | 1.39 | -- | -- | -0.973 | -- | 85 | 1492 | -- | -- |
| 511.7 | 1.05 | 6.44 | -- | 0.647 | 1.44 | -- | -- | -0.842 | 9.94 | 94.99 | 2688 | -- | -- |
| 282.57 | 0.785 | 6.5 | -3.28 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 546.72 | 1.09 | 6.4 | -- | 0.568 | -- | -- | -- | -0.642 | 9.49 | -- | -- | -- | -- |
| 530.53 | 1.07 | 6.43 | -- | -- | 1.15 | -- | -- | -0.681 | -- | 107.1 | 1523 | -- | -- |
| 565.69 | 1.11 | 6.42 | -- | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 182.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 3 | 182.23 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 4 | 182.48 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 182.86 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 6 | 182.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 7 | 183.14 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 9 | 183.80 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 12 | 185.28 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 15 | 185.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 18 | 186.31 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 19 | 186.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 24 | 186.71 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 25 | 186.72 | wind | 7 | 14400 | < th | dose independent | sin | 0 | NA |
| 28 | 187.08 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 30 | 187.19 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 34 | 187.29 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 35 | 187.32 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 36 | 187.33 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 41 | 187.52 | wind | 7 | 14400 | > th | dose independent | sin | 0 | NA |
| 59 | 187.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 61 | 187.96 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 62 | 187.96 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 65 | 187.99 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 68 | 188.00 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 71 | 188.02 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 77 | 188.06 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 78 | 188.06 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 87 | 188.15 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 90 | 188.18 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 98 | 188.31 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 99 | 188.31 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 100 | 188.31 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 109 | 188.41 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 116 | 188.43 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 117 | 188.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 132 | 188.56 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 134 | 188.59 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 136 | 188.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 142 | 188.68 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 157 | 188.78 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 163 | 188.84 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 167 | 188.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 179 | 188.93 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 180 | 188.93 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 181 | 188.93 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 11 |
| 184 | 188.97 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 185 | 188.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 187 | 189.00 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 189 | 189.01 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 200 | 189.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 206 | 189.10 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 219 | 189.17 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 21 |
| 252 | 189.27 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 268 | 189.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 276 | 189.45 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 280 | 189.46 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 328 | 189.76 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 330 | 189.76 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 342 | 189.83 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 344 | 189.83 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 354 | 189.88 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 357 | 189.89 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 363 | 189.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 400 | 190.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 411 | 190.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 425 | 190.19 | wind | 1 | 43200 | > th | dose dependent | sin | 23 | NA |
| 462 | 190.26 | wind | 9 | 43200 | < th | dose dependent | sin | 0 | NA |
| 503 | 190.44 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 520 | 190.51 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 537 | 190.57 | wind | 3 | 43200 | < th | dose independent | no | NA | NA |
| 540 | 190.57 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 541 | 190.58 | wind | 3 | 43200 | < th | dose independent | sin | 2 | NA |
| 548 | 190.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 21 |
| 554 | 190.63 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 634 | 190.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 22 |
| 647 | 190.84 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 22 |
| 707 | 191.04 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 717 | 191.06 | wind | 9 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 726 | 191.08 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 740 | 191.12 | wind | 3 | 43200 | > th | dose independent | sin | 13 | NA |
| 742 | 191.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 752 | 191.16 | wind | 7 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 800 | 191.27 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 833 | 191.31 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 919 | 191.42 | wind | 3 | 14400 | > th | dose dependent | rect. | 5 | 9 |
