FiT-DB / Search/ Help/ Sample detail

Os04g0580300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0195) R2 : 0.474
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.5 (0.0797) R2dE : 0.472 R2E : 0.474
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00462 (0.0432) R2dN8 : 2.19e-05 R2N8 : 0.00194
σ : 0.36
deviance : 59.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.66
memory length : 5705
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.66 0.296 12.3 0.305 0.576 -1.08 -1.04 0.723 0.116 7.41 31.06 4954 -- --
40.31 0.296 12.2 0.474 0.576 -1.12 -1.03 -- 0.176 7.44 39.94 5002 -- --
42.52 0.304 12.3 0.284 0.56 -1.06 -- 0.739 0.117 7.17 31.12 4726 -- --
43.15 0.306 12.2 0.452 0.573 -1.12 -- -- 0.178 7.23 43.51 4834 -- --
57.73 0.354 12.3 0.22 -- -1.1 -- 0.96 0.0993 -- 63.77 5711 -- --
61.82 0.369 12.2 0.997 0.549 -- -1.07 -- 0.395 7.23 -- -- -- --
64.81 0.377 12.2 0.973 0.55 -- -- -- 0.397 7.02 -- -- -- --
58.56 0.356 12.2 0.471 -- -1.1 -- -- 0.188 -- 58.44 4352 -- --
44.55 0.311 12.2 -- 0.551 -1.49 -- -- 0.00897 7.19 24.86 5661 -- --
80.72 0.42 12.2 0.984 -- -- -- -- 0.407 -- -- -- -- --
89.78 0.443 12.2 -- 0.561 -- -- -- 0.288 6.92 -- -- -- --
59.65 0.36 12.3 -- -- -1.5 -- -- 0.00462 -- 24.66 5705 -- --
106.28 0.481 12.2 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.23 radiation 1 43200 < th dose dependent rect. 15 14
4 39.36 radiation 1 43200 < th dose independent rect. 18 1
6 39.37 radiation 1 43200 < th dose independent rect. 18 6
7 39.37 radiation 1 43200 < th dose dependent rect. 15 4
13 39.37 radiation 1 43200 < th dose dependent rect. 8 21
29 39.38 temperature 25 4320 < th dose independent rect. 7 11
40 39.42 temperature 25 4320 < th dose independent rect. 2 16
53 39.44 radiation 1 43200 > th dose dependent rect. 18 1
65 39.47 temperature 25 4320 > th dose independent rect. 7 11
67 39.47 radiation 1 43200 < th dose dependent rect. 7 12
117 39.53 radiation 1 43200 < th dose dependent sin 15 NA
123 39.54 radiation 1 43200 < th dose independent rect. 7 12
128 39.54 temperature 25 4320 > th dose independent rect. 2 16
173 39.57 radiation 1 43200 > th dose independent rect. 9 1
179 39.57 radiation 1 43200 < th dose dependent rect. 15 19
181 39.58 radiation 1 43200 < th dose independent rect. 9 1
192 39.58 temperature 15 4320 > th dose dependent rect. 23 2
193 39.58 radiation 1 43200 < th dose dependent rect. 7 9
221 39.61 temperature 25 4320 < th dose independent sin 1 NA
226 39.61 temperature 30 4320 < th dose dependent rect. 23 1
249 39.64 temperature 25 4320 < th dose independent rect. 7 7
266 39.65 radiation 1 43200 > th dose independent rect. 17 2
267 39.65 temperature 25 4320 < th dose independent rect. 15 3
271 39.65 radiation 1 43200 > th dose independent rect. 8 6
279 39.65 radiation 1 43200 > th dose independent rect. 7 12
291 39.65 radiation 1 43200 < th dose dependent rect. 8 6
295 39.65 radiation 1 43200 < th dose dependent rect. 4 15
306 39.66 radiation 1 43200 < th dose independent rect. 8 6
307 39.66 radiation 1 43200 > th dose independent rect. 7 9
308 39.66 radiation 1 43200 < th dose independent rect. 7 9
310 39.66 radiation 1 43200 < th dose dependent no NA NA
358 39.66 radiation 1 43200 < th dose dependent rect. 18 23
417 39.71 temperature 25 4320 > th dose independent sin 1 NA
428 39.72 radiation 1 43200 < th dose independent sin 17 NA
454 39.73 temperature 25 4320 > th dose independent rect. 8 6
526 39.75 temperature 30 4320 < th dose dependent rect. 1 1
552 39.76 temperature 25 4320 > th dose independent rect. 15 3
599 39.78 wind 5 43200 > th dose dependent rect. 14 4
615 39.80 temperature 20 43200 < th dose independent rect. 14 1
628 39.81 temperature 30 4320 < th dose dependent rect. 11 18
641 39.82 wind 5 43200 > th dose dependent rect. 11 13
684 39.84 temperature 15 4320 > th dose dependent rect. 23 9
685 39.84 wind 5 43200 > th dose dependent rect. 13 11
686 39.84 temperature 30 4320 < th dose dependent rect. 15 14
693 39.85 temperature 20 43200 > th dose independent rect. 14 1
714 39.86 atmosphere 1010 43200 < th dose independent rect. 10 1
722 39.86 wind 5 43200 > th dose dependent rect. 10 8
732 39.87 atmosphere 1005 43200 > th dose independent rect. 13 4
750 39.87 wind 5 43200 > th dose dependent rect. 10 11
753 39.87 temperature 30 4320 < th dose dependent rect. 23 14
761 39.88 atmosphere 1005 43200 > th dose independent rect. 15 2
777 39.88 temperature 15 4320 > th dose dependent sin 10 NA
780 39.88 radiation 1 43200 < th dose dependent rect. 9 1
802 39.89 temperature 30 4320 < th dose dependent sin 10 NA
810 39.89 temperature 30 4320 < th dose dependent rect. 23 9
811 39.89 radiation 1 43200 < th dose dependent rect. 4 9
821 39.89 temperature 15 4320 > th dose dependent rect. 15 14
864 39.90 temperature 30 4320 < th dose dependent rect. 23 20
883 39.91 radiation 1 43200 < th dose dependent rect. 4 7
890 39.91 temperature 25 4320 < th dose dependent rect. 18 11
894 39.91 temperature 15 4320 > th dose dependent rect. 23 14
935 39.92 temperature 25 4320 < th dose dependent rect. 18 14
953 39.92 temperature 15 4320 > th dose dependent rect. 12 18
961 39.92 temperature 30 4320 < th dose dependent rect. 15 22
964 39.93 atmosphere 1010 43200 > th dose independent rect. 9 2