Os04g0577800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0136, Transmembrane family protein.
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Os04g0577800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0136, Transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.06 | 0.634 | 7.18 | -1.83 | 3.6 | 2.12 | 1.17 | -2.24 | -0.368 | 6.75 | 25.7 | 2334 | -- | -- |
| 183.07 | 0.63 | 7.13 | -1.33 | 3.58 | 1.92 | 1.22 | -- | -0.268 | 6.75 | 25.37 | 2340 | -- | -- |
| 185.45 | 0.634 | 7.19 | -1.83 | 3.59 | 2.12 | -- | -2.31 | -0.382 | 6.74 | 25.61 | 2351 | -- | -- |
| 186.51 | 0.636 | 7.13 | -1.26 | 3.52 | 1.85 | -- | -- | -0.26 | 6.74 | 25.5 | 2426 | -- | -- |
| 785.36 | 1.31 | 7.27 | -1.75 | -- | 1.99 | -- | -0.59 | -0.446 | -- | 23.8 | 2797 | -- | -- |
| 296.93 | 0.808 | 7.09 | -0.717 | 3.44 | -- | 1.1 | -- | -0.107 | 6.44 | -- | -- | -- | -- |
| 299.96 | 0.811 | 7.1 | -0.703 | 3.44 | -- | -- | -- | -0.111 | 6.43 | -- | -- | -- | -- |
| 782.03 | 1.3 | 7.23 | -1.31 | -- | 1.85 | -- | -- | -0.314 | -- | 23.8 | 2801 | -- | -- |
| 226.35 | 0.701 | 7.1 | -- | 3.49 | 1.59 | -- | -- | -0.0814 | 6.67 | 26 | 2442 | -- | -- |
| 916.05 | 1.41 | 7.16 | -0.615 | -- | -- | -- | -- | -0.0385 | -- | -- | -- | -- | -- |
| 312.99 | 0.828 | 7.08 | -- | 3.43 | -- | -- | -- | -0.0328 | 6.44 | -- | -- | -- | -- |
| 812.08 | 1.33 | 7.17 | -- | -- | 1.61 | -- | -- | -0.087 | -- | 25.25 | 1344 | -- | -- |
| 926.03 | 1.42 | 7.15 | -- | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.81 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 2 | 183.83 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 3 | 184.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 4 | 184.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 5 | 185.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 7 | 185.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 9 | 185.59 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 10 | 185.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 11 | 185.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 16 | 185.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 21 | 185.87 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 33 | 186.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 52 | 186.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 80 | 186.45 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 88 | 186.49 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 146 | 186.84 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 161 | 186.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 227 | 187.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 330 | 188.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 344 | 188.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 352 | 188.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 357 | 188.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 359 | 188.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 367 | 188.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 368 | 188.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 374 | 188.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 376 | 188.87 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 394 | 189.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 403 | 189.16 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 409 | 189.24 | radiation | 10 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 429 | 189.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 448 | 189.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 456 | 189.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 460 | 189.39 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 481 | 189.52 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 484 | 189.58 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 497 | 189.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 504 | 189.82 | temperature | 30 | 1440 | < th | dose independent | sin | 19 | NA |
| 531 | 189.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 568 | 189.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 576 | 190.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 662 | 190.24 | temperature | 30 | 1440 | > th | dose independent | sin | 18 | NA |
| 684 | 190.42 | wind | 5 | 43200 | > th | dose dependent | sin | 4 | NA |
| 686 | 190.43 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 695 | 190.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 700 | 190.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 712 | 190.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 715 | 190.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 716 | 190.68 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 718 | 190.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 720 | 190.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 760 | 190.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 776 | 190.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 814 | 190.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 830 | 190.82 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 880 | 191.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 885 | 191.04 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 901 | 191.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 910 | 191.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 911 | 191.16 | temperature | 25 | 14400 | > th | dose dependent | sin | 13 | NA |
| 929 | 191.35 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 934 | 191.38 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 936 | 191.40 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 942 | 191.42 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 944 | 191.42 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 946 | 191.43 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |