FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0577600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0247) R2 : 0.187
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.658 (0.0647) R2dC : 0.186 R2C : 0.183
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0722 (0.0519) R2dN8 : 0.00445 R2N8 : 0.00146
σ : 0.465
deviance : 98.94
__
_____
C
peak time of C : 5.78
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.51 0.432 3.45 -0.0527 0.663 2.16 0.204 -2.44 -0.00901 6.13 0.06683 633 -- --
84.59 0.428 3.44 0.00946 0.695 1.84 0.383 -- -0.0295 6.08 0.3405 524 -- --
84.61 0.428 3.45 -0.0485 0.662 2.13 -- -2.35 -0.01 6.1 0.08337 632 -- --
84.61 0.428 3.44 0.000927 0.681 1.69 -- -- -0.0227 6.14 0.3108 525 -- --
107.33 0.483 3.46 -0.0233 -- 1.99 -- -1.98 0.00442 -- -0.07876 636 -- --
98.28 0.465 3.44 0.15 0.655 -- 0.161 -- -0.0547 5.79 -- -- -- --
98.34 0.464 3.44 0.151 0.656 -- -- -- -0.0553 5.8 -- -- -- --
107.52 0.483 3.45 -0.00109 -- 1.43 -- -- -0.0035 -- 0.05599 645 -- --
84.61 0.428 3.44 -- 0.68 1.69 -- -- -0.0215 6.15 0.3219 525 -- --
120.66 0.513 3.45 0.172 -- -- -- -- -0.0399 -- -- -- -- --
98.94 0.465 3.45 -- 0.658 -- -- -- -0.0722 5.78 -- -- -- --
107.51 0.483 3.45 -- -- 1.46 -- -- -0.0024 -- -0.0001549 634 -- --
121.43 0.514 3.46 -- -- -- -- -- -0.0589 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.56 precipitation 0.1 720 > th dose independent rect. 18 10
2 81.63 humidity 90.0 720 > th dose dependent rect. 18 3
4 81.85 wind 1.0 720 < th dose independent rect. 18 1
6 81.86 precipitation 0.1 720 > th dose dependent rect. 18 10
11 82.49 humidity 90.0 720 > th dose dependent sin 21 NA
16 82.77 humidity 90.0 720 > th dose dependent rect. 9 12
17 82.78 wind 1.0 720 < th dose dependent rect. 18 1
29 83.01 precipitation 0.1 720 > th dose independent rect. 18 1
40 83.15 precipitation 0.1 720 > th dose dependent rect. 18 1
76 83.67 precipitation 0.1 720 > th dose dependent rect. 18 23
81 83.85 precipitation 0.1 720 > th dose dependent rect. 18 4
97 84.01 precipitation 0.1 720 > th dose dependent sin 12 NA
121 84.28 humidity 90.0 270 > th dose dependent rect. 5 18
123 84.30 humidity 90.0 270 > th dose dependent rect. 5 20
124 84.31 precipitation 0.1 720 < th dose independent rect. 21 23
125 84.31 precipitation 0.1 720 < th dose dependent rect. 21 23
140 84.54 precipitation 0.1 720 < th dose independent rect. 16 17
141 84.54 precipitation 0.1 720 < th dose dependent rect. 16 17
146 84.64 precipitation 0.1 720 > th dose independent rect. 16 12
148 84.69 precipitation 0.1 720 > th dose independent sin 13 NA
151 84.72 precipitation 0.1 720 > th dose independent rect. 23 21
152 84.73 precipitation 0.1 720 < th dose independent rect. 13 15
153 84.73 precipitation 0.1 720 < th dose dependent rect. 13 15
160 84.91 precipitation 0.1 720 > th dose dependent rect. 16 4
172 85.12 precipitation 0.1 720 > th dose dependent rect. 23 21
173 85.13 precipitation 0.1 720 > th dose independent rect. 18 23
196 85.35 precipitation 0.1 720 < th dose independent sin 12 NA
197 85.35 precipitation 0.1 720 < th dose dependent sin 12 NA
203 85.38 precipitation 0.1 720 > th dose dependent rect. 16 22
204 85.39 precipitation 0.1 720 > th dose independent rect. 16 4
213 85.45 precipitation 0.1 720 > th dose dependent rect. 13 22
227 85.48 precipitation 0.1 720 > th dose dependent rect. 5 23
229 85.50 precipitation 0.1 720 > th dose dependent no NA NA
230 85.50 precipitation 0.1 720 > th dose dependent rect. 9 23
233 85.51 precipitation 0.1 720 > th dose independent rect. 18 20
249 85.55 precipitation 0.1 720 > th dose dependent rect. 13 19
255 85.56 precipitation 0.1 720 > th dose dependent rect. 16 19
279 85.60 precipitation 0.1 720 > th dose dependent rect. 2 23
297 85.65 precipitation 0.1 720 > th dose dependent rect. 16 16
301 85.66 precipitation 0.1 720 > th dose independent rect. 16 22
343 85.75 precipitation 0.1 720 > th dose independent rect. 5 23
399 85.94 precipitation 0.1 720 > th dose dependent rect. 8 12
412 85.97 precipitation 0.1 720 > th dose independent rect. 9 19
420 85.99 precipitation 0.1 720 < th dose independent rect. 3 16
422 85.99 precipitation 0.1 720 < th dose dependent rect. 3 16
423 86.00 precipitation 0.1 720 > th dose independent rect. 9 22
441 86.04 precipitation 0.1 720 > th dose independent no NA NA
442 86.04 precipitation 0.1 720 < th dose independent no NA NA
448 86.04 precipitation 0.1 720 < th dose dependent no NA NA
483 86.14 precipitation 0.1 720 < th dose independent rect. 6 23
485 86.14 precipitation 0.1 720 < th dose dependent rect. 6 23
487 86.17 precipitation 0.1 720 > th dose independent rect. 2 23
565 86.57 precipitation 0.1 720 < th dose independent rect. 16 9
567 86.57 precipitation 0.1 720 < th dose dependent rect. 16 9
572 86.60 humidity 90.0 270 > th dose independent rect. 3 20
689 87.05 precipitation 0.1 720 < th dose independent sin 0 NA
691 87.05 precipitation 0.1 720 < th dose dependent sin 0 NA
693 87.06 precipitation 0.1 720 > th dose independent sin 0 NA
719 87.16 humidity 80.0 1440 < th dose independent rect. 11 2
723 87.18 humidity 70.0 270 > th dose dependent rect. 17 17
782 87.44 humidity 80.0 1440 > th dose dependent rect. 10 4
804 87.54 precipitation 0.1 720 < th dose independent rect. 7 16
805 87.54 precipitation 0.1 720 < th dose dependent rect. 7 16
809 87.56 humidity 80.0 1440 > th dose independent sin 2 NA
818 87.59 precipitation 0.1 720 < th dose independent rect. 5 15
821 87.59 precipitation 0.1 720 < th dose dependent rect. 5 15
822 87.60 humidity 80.0 1440 < th dose independent rect. 8 6
824 87.61 humidity 90.0 720 > th dose independent rect. 16 1
828 87.62 humidity 80.0 1440 < th dose independent sin 2 NA
837 87.63 precipitation 0.1 720 < th dose independent rect. 7 18
838 87.63 precipitation 0.1 720 < th dose dependent rect. 7 18
846 87.65 humidity 80.0 1440 < th dose independent rect. 23 19
848 87.66 humidity 80.0 1440 > th dose independent rect. 1 17
856 87.67 humidity 80.0 1440 > th dose independent rect. 23 19
860 87.68 precipitation 0.1 1440 < th dose independent rect. 18 9
865 87.68 precipitation 0.1 1440 < th dose dependent rect. 18 9
901 87.76 precipitation 0.1 720 < th dose independent rect. 13 7
906 87.76 precipitation 0.1 720 < th dose dependent rect. 13 7
909 87.79 humidity 80.0 1440 > th dose independent rect. 11 2
943 87.84 humidity 80.0 1440 > th dose independent rect. 8 6