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Os04g0577500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TatD-related deoxyribonuclease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.3 (0.0164) R2 : 0.724
β1 : -1.4 (0.06) R2dD : 0.343 R2D : 0.204
β2 : 1 (0.0426) R2dC : 0.335 R2C : 0.26
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.565 (0.035) R2dN8 : 0.211 R2N8 : 0.0602
σ : 0.308
deviance : 43.3
__
_____
C
peak time of C : 5.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.78 0.289 9.25 -1.02 0.999 0.155 0.218 -1.08 -0.439 5.23 1011 7470 -- --
41.09 0.299 9.28 -1.23 0.997 0.289 0.128 -- -0.476 5.22 1011 27342 -- --
37.89 0.287 9.25 -1.02 1 0.153 -- -1.09 -0.44 5.22 1011 7452 -- --
41.17 0.299 9.28 -1.25 1 0.26 -- -- -0.484 5.22 1011 27336 -- --
89.94 0.442 9.26 -0.979 -- 0.124 -- -1.12 -0.428 -- 1012 7864 -- --
43.15 0.308 9.3 -1.4 0.999 -- 0.246 -- -0.564 5.2 -- -- -- --
43.3 0.308 9.3 -1.4 1 -- -- -- -0.565 5.2 -- -- -- --
93.88 0.451 9.3 -1.21 -- 0.248 -- -- -0.472 -- 1010 29250 -- --
54.67 0.344 9.21 -- 0.998 1.01 -- -- -0.142 5.15 1013 47520 -- --
95.65 0.457 9.31 -1.37 -- -- -- -- -0.54 -- -- -- -- --
95.18 0.456 9.27 -- 0.976 -- -- -- -0.409 5.25 -- -- -- --
103.41 0.474 9.24 -- -- 0.939 -- -- -0.204 -- 1016 47520 -- --
145.01 0.562 9.28 -- -- -- -- -- -0.388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.67 temperature 15.0 14400 < th dose independent rect. 9 3
3 38.71 temperature 15.0 14400 > th dose independent rect. 9 3
5 38.74 temperature 25.0 1440 > th dose dependent rect. 5 4
9 38.80 wind 5.0 4320 < th dose independent rect. 15 1
19 38.84 wind 5.0 4320 > th dose independent rect. 15 1
20 38.84 temperature 15.0 14400 < th dose independent rect. 11 1
28 38.89 wind 1.0 43200 < th dose independent sin 15 NA
32 38.90 wind 1.0 43200 < th dose independent rect. 16 12
33 38.90 wind 1.0 43200 < th dose dependent sin 15 NA
36 38.91 wind 1.0 43200 < th dose independent rect. 18 8
37 38.93 temperature 15.0 14400 < th dose dependent rect. 1 11
40 38.94 temperature 15.0 14400 < th dose dependent rect. 3 9
48 38.95 temperature 25.0 1440 > th dose dependent rect. 22 12
54 38.96 temperature 15.0 14400 < th dose dependent rect. 10 1
64 38.97 wind 3.0 4320 > th dose dependent rect. 15 1
80 38.98 wind 9.0 14400 > th dose dependent rect. 22 17
81 38.99 temperature 15.0 14400 < th dose dependent sin 5 NA
92 39.00 temperature 15.0 14400 < th dose dependent rect. 4 4
100 39.00 radiation 40.0 4320 > th dose dependent rect. 15 17
127 39.03 humidity 50.0 43200 < th dose dependent rect. 16 18
129 39.04 temperature 15.0 14400 < th dose dependent rect. 1 1
130 39.04 humidity 50.0 43200 < th dose dependent rect. 17 3
139 39.05 wind 9.0 14400 > th dose independent rect. 22 17
142 39.05 temperature 15.0 14400 < th dose dependent rect. 23 3
147 39.06 wind 9.0 14400 > th dose dependent rect. 13 2
156 39.07 wind 7.0 14400 > th dose independent rect. 5 1
181 39.09 temperature 15.0 14400 < th dose dependent rect. 5 1
186 39.10 wind 9.0 14400 > th dose independent rect. 13 2
205 39.11 precipitation 0.1 14400 > th dose independent rect. 5 2
206 39.11 wind 1.0 43200 < th dose independent rect. 20 6
207 39.11 wind 1.0 43200 > th dose independent rect. 18 8
219 39.11 wind 1.0 43200 < th dose dependent rect. 13 15
237 39.13 wind 9.0 14400 < th dose independent rect. 13 1
239 39.13 wind 9.0 14400 < th dose independent rect. 22 17
241 39.13 precipitation 0.1 14400 > th dose dependent rect. 5 2
244 39.13 humidity 50.0 43200 < th dose dependent rect. 17 14
249 39.14 wind 1.0 43200 > th dose independent sin 14 NA
252 39.14 wind 1.0 43200 > th dose independent rect. 16 12
272 39.15 humidity 50.0 43200 < th dose dependent rect. 17 12
292 39.17 wind 9.0 14400 > th dose dependent rect. 3 12
313 39.19 wind 1.0 43200 < th dose independent rect. 22 4
314 39.19 wind 9.0 14400 > th dose independent rect. 3 12
323 39.20 wind 7.0 14400 < th dose independent rect. 5 1
340 39.21 atmosphere 1010.0 4320 > th dose independent rect. 4 1
341 39.21 atmosphere 1010.0 4320 < th dose independent rect. 4 1
378 39.24 humidity 80.0 14400 > th dose independent rect. 3 1
379 39.24 precipitation 0.1 14400 < th dose independent rect. 5 2
386 39.24 precipitation 0.1 14400 < th dose dependent rect. 5 2
393 39.24 temperature 15.0 14400 < th dose dependent rect. 7 23
397 39.25 humidity 50.0 43200 < th dose independent rect. 18 2
401 39.25 temperature 15.0 14400 < th dose dependent no NA NA
402 39.25 wind 9.0 4320 < th dose dependent rect. 14 2
418 39.26 wind 9.0 14400 < th dose independent rect. 3 12
463 39.28 wind 9.0 14400 > th dose dependent rect. 10 5
493 39.29 temperature 15.0 14400 < th dose dependent rect. 3 23
509 39.31 wind 1.0 43200 < th dose independent rect. 23 2
510 39.31 temperature 30.0 1440 > th dose independent rect. 10 4
563 39.34 precipitation 0.1 14400 > th dose independent rect. 4 4
577 39.35 wind 9.0 14400 > th dose independent rect. 11 4
579 39.35 wind 1.0 43200 > th dose independent rect. 20 6
586 39.35 precipitation 0.1 14400 > th dose dependent rect. 4 4
589 39.36 humidity 50.0 43200 < th dose independent sin 11 NA
591 39.36 atmosphere 1005.0 43200 < th dose independent rect. 10 2
596 39.36 wind 9.0 14400 > th dose independent rect. 9 6
616 39.38 wind 7.0 14400 < th dose independent rect. 11 1
648 39.39 wind 1.0 43200 > th dose independent rect. 14 14
649 39.39 wind 9.0 4320 > th dose dependent rect. 18 1
656 39.40 wind 7.0 14400 > th dose independent rect. 11 1
657 39.40 temperature 30.0 1440 < th dose independent rect. 11 1
662 39.40 precipitation 0.1 14400 < th dose independent rect. 4 4
671 39.40 precipitation 0.1 14400 < th dose dependent rect. 4 4
681 39.41 wind 9.0 14400 < th dose independent rect. 7 8
687 39.41 wind 1.0 43200 < th dose dependent rect. 18 8
700 39.42 humidity 50.0 43200 < th dose independent rect. 17 17
731 39.43 atmosphere 1010.0 43200 < th dose dependent rect. 9 2
735 39.44 humidity 80.0 14400 < th dose independent rect. 3 1
736 39.44 humidity 50.0 43200 > th dose independent rect. 18 2
745 39.44 humidity 50.0 43200 < th dose independent rect. 15 19
788 39.47 atmosphere 1005.0 43200 > th dose independent rect. 10 1
848 39.50 humidity 50.0 43200 < th dose dependent rect. 9 1
864 39.51 temperature 25.0 4320 > th dose independent rect. 17 1
865 39.51 atmosphere 1010.0 4320 > th dose independent rect. 9 1
868 39.51 wind 1.0 43200 > th dose independent rect. 22 4
869 39.51 humidity 50.0 43200 < th dose independent rect. 15 4
916 39.53 humidity 80.0 14400 < th dose dependent rect. 22 1
917 39.53 atmosphere 1010.0 4320 > th dose dependent rect. 8 1
924 39.54 temperature 25.0 1440 > th dose independent rect. 7 1
929 39.54 humidity 50.0 43200 > th dose independent rect. 17 15
936 39.55 humidity 50.0 43200 > th dose independent sin 11 NA
960 39.56 atmosphere 1010.0 4320 > th dose independent sin 7 NA
961 39.56 temperature 25.0 1440 < th dose independent rect. 7 2
971 39.56 wind 9.0 14400 > th dose independent rect. 19 21