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Os04g0576900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0344) R2 : 0.399
β1 : 1.51 (0.129) R2dD : 0.206 R2D : 0.0716
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.37 (0.157) R2dE : 0.352 R2E : 0.193
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.268 (0.077) R2dN8 : 0.0237 R2N8 : -0.0528
σ : 0.633
deviance : 184.99
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C
peak time of C : --
E
wheather : temperature
threshold : 30.1
memory length : 234
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.1
open length of G : 22.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.07 0.598 9.82 1.41 0.711 2.79 -1.87 0.366 0.256 22.9 30.54 348 22.9 20.4
161.97 0.593 9.82 1.42 0.741 2.78 -1.97 -- 0.256 22.9 30.6 340 22.9 20.2
171.19 0.609 9.84 1.26 0.765 2.81 -- 2.03 0.215 22.8 30.83 342 23 20.1
178.46 0.622 9.82 1.53 0.752 2.79 -- -- 0.253 22.9 31.18 354 22.8 20.5
183.04 0.63 9.84 1.26 -- 2.38 -- 1.57 0.188 -- 29.77 236 23.2 22.1
252.38 0.745 9.88 0.976 0.678 -- 0.345 -- -0.148 5.15 -- -- -- --
252.45 0.744 9.88 0.974 0.68 -- -- -- -0.15 4.81 -- -- -- --
184.99 0.633 9.8 1.51 -- 2.37 -- -- 0.268 -- 30.1 234 23.1 22.5
234.16 0.713 9.88 -- 1.03 2.3 -- -- -0.0813 0.243 39.89 403 22.4 20.6
276.88 0.778 9.89 1 -- -- -- -- -0.132 -- -- -- -- --
277.47 0.779 9.91 -- 0.698 -- -- -- -0.258 4.77 -- -- -- --
241.48 0.724 9.86 -- -- 1.87 -- -- -0.0115 -- 30.99 207 22 22.6
303.24 0.813 9.91 -- -- -- -- -- -0.243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.39 temperature 30 270 < th dose dependent rect. 23 21
14 171.11 temperature 10 270 > th dose dependent sin 4 NA
20 171.96 temperature 10 720 > th dose dependent rect. 21 18
23 172.11 temperature 30 270 < th dose dependent rect. 24 15
28 172.52 temperature 15 720 > th dose dependent rect. 3 6
29 172.61 temperature 30 270 < th dose dependent sin 5 NA
32 172.87 temperature 10 720 > th dose dependent rect. 21 16
36 173.08 temperature 10 720 > th dose dependent sin 7 NA
39 173.24 temperature 10 720 > th dose dependent rect. 1 8
62 174.72 temperature 10 720 > th dose dependent rect. 21 14
85 175.86 temperature 10 720 > th dose dependent rect. 23 10
143 177.88 temperature 15 720 > th dose dependent rect. 23 12
160 178.23 temperature 15 270 > th dose dependent rect. 17 23
222 179.70 temperature 15 270 > th dose dependent rect. 4 11
253 180.48 temperature 10 270 > th dose dependent rect. 3 23
303 181.35 temperature 15 30 > th dose dependent rect. 23 23
386 182.69 temperature 30 270 < th dose dependent rect. 7 23
391 182.79 temperature 30 270 < th dose dependent no NA NA
406 183.07 temperature 30 270 < th dose dependent rect. 15 23
420 183.21 temperature 15 30 > th dose dependent rect. 3 23
436 183.41 temperature 15 30 > th dose dependent rect. 1 23
538 184.50 temperature 30 30 < th dose dependent rect. 9 23
630 185.34 temperature 15 270 > th dose dependent rect. 1 23
640 185.51 temperature 20 720 > th dose independent rect. 3 6
703 186.08 temperature 30 10 < th dose dependent rect. 24 23
727 186.34 temperature 15 10 > th dose dependent no NA NA
736 186.42 temperature 15 10 > th dose dependent rect. 21 23
798 186.97 temperature 20 10 > th dose dependent rect. 6 23
806 187.08 temperature 30 30 < th dose dependent rect. 11 23
879 187.73 temperature 20 720 > th dose independent rect. 3 21
927 188.13 temperature 20 720 > th dose independent rect. 21 18
937 188.21 temperature 20 720 > th dose independent rect. 23 16
952 188.34 temperature 20 720 > th dose independent sin 6 NA