Os04g0576400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0576400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.23 | 0.399 | 2.74 | 0.0983 | 0.0695 | -0.0546 | -0.23 | 3.02 | 0.118 | 6 | 0.8 | 10 | -- | -- |
| 73.92 | 0.4 | 2.74 | 0.0761 | 0.00493 | 0.473 | -0.17 | -- | 0.123 | 6.37 | 1.3 | 8 | -- | -- |
| 72.32 | 0.396 | 2.73 | 0.0954 | 0.0727 | -0.032 | -- | 2.97 | 0.121 | 7.38 | 0.8 | 9 | -- | -- |
| 73.97 | 0.401 | 2.74 | 0.0715 | 0.00959 | 0.489 | -- | -- | 0.132 | 6.67 | 1.308 | 8 | -- | -- |
| 72.59 | 0.397 | 2.74 | 0.0965 | -- | 0.00889 | -- | 2.86 | 0.122 | -- | 0.8 | 9 | -- | -- |
| 76.24 | 0.409 | 2.75 | 0.109 | 0.0702 | -- | -0.144 | -- | 0.117 | 6.48 | -- | -- | -- | -- |
| 76.29 | 0.409 | 2.75 | 0.107 | 0.0705 | -- | -- | -- | 0.117 | 5.95 | -- | -- | -- | -- |
| 73.98 | 0.401 | 2.74 | 0.0726 | -- | 0.494 | -- | -- | 0.131 | -- | 1.3 | 8 | -- | -- |
| 74.09 | 0.401 | 2.75 | -- | 0.0354 | 0.534 | -- | -- | 0.118 | 8.6 | 1.283 | 8 | -- | -- |
| 76.54 | 0.409 | 2.75 | 0.109 | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
| 76.59 | 0.409 | 2.75 | -- | 0.0721 | -- | -- | -- | 0.105 | 5.88 | -- | -- | -- | -- |
| 74.11 | 0.401 | 2.75 | -- | -- | 0.503 | -- | -- | 0.124 | -- | 1.316 | 8 | -- | -- |
| 76.86 | 0.409 | 2.75 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.31 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 7 | 69.52 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 14 |
| 17 | 69.89 | wind | 1.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 31 | 70.13 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 11 |
| 62 | 70.37 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 11 |
| 87 | 70.53 | wind | 1.0 | 10 | < th | dose independent | sin | 17 | NA |
| 89 | 70.54 | wind | 1.0 | 10 | > th | dose independent | sin | 17 | NA |
| 126 | 70.79 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 165 | 71.05 | wind | 1.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 171 | 71.05 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 175 | 71.06 | wind | 1.0 | 10 | < th | dose independent | rect. | 23 | 4 |
| 350 | 71.78 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 451 | 72.08 | wind | 1.0 | 90 | < th | dose independent | rect. | 22 | 2 |
| 536 | 72.44 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 539 | 72.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 541 | 72.44 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 542 | 72.44 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 545 | 72.44 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 547 | 72.44 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 549 | 72.44 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 554 | 72.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 556 | 72.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 558 | 72.44 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 561 | 72.44 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 563 | 72.44 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 565 | 72.44 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 567 | 72.44 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 572 | 72.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 579 | 72.45 | wind | 1.0 | 90 | < th | dose independent | rect. | 17 | 7 |
| 595 | 72.46 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 604 | 72.48 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 612 | 72.49 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 16 |
| 635 | 72.51 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 660 | 72.53 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 661 | 72.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 664 | 72.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 668 | 72.53 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 677 | 72.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 678 | 72.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 700 | 72.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 704 | 72.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 713 | 72.53 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 766 | 72.57 | wind | 1.0 | 10 | < th | dose dependent | no | NA | NA |
| 849 | 72.65 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 903 | 72.78 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 968 | 72.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 970 | 72.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 981 | 72.91 | wind | 1.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 991 | 72.98 | wind | 1.0 | 10 | > th | dose independent | no | NA | NA |
| 999 | 73.00 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |