Os04g0575400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os04g0575400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.55 | 0.347 | 9.09 | 2.47 | 0.292 | -1.25 | 0.352 | 3.13 | 0.581 | 11 | 19.49 | 1565 | -- | -- |
| 61.95 | 0.367 | 9.19 | 1.87 | 0.304 | -1.44 | 0.403 | -- | 0.377 | 9.29 | 15 | 4357 | -- | -- |
| 54.98 | 0.345 | 9.09 | 2.46 | 0.293 | -1.29 | -- | 3.1 | 0.58 | 11.3 | 19.1 | 1629 | -- | -- |
| 61.55 | 0.365 | 9.19 | 1.84 | 0.293 | -1.44 | -- | -- | 0.355 | 10.7 | 12.99 | 4559 | -- | -- |
| 57.44 | 0.353 | 9.08 | 2.55 | -- | -1.42 | -- | 3.2 | 0.606 | -- | 18.6 | 2250 | -- | -- |
| 99.2 | 0.467 | 9.26 | 1.14 | 0.318 | -- | 0.36 | -- | 0.0698 | 11 | -- | -- | -- | -- |
| 99.75 | 0.468 | 9.26 | 1.16 | 0.316 | -- | -- | -- | 0.071 | 11 | -- | -- | -- | -- |
| 64.6 | 0.374 | 9.2 | 1.81 | -- | -1.52 | -- | -- | 0.368 | -- | 12.06 | 3798 | -- | -- |
| 120.48 | 0.514 | 9.25 | -- | 0.569 | -1.17 | -- | -- | 0.0811 | 12.6 | 12.99 | 4559 | -- | -- |
| 105.97 | 0.481 | 9.26 | 1.15 | -- | -- | -- | -- | 0.0687 | -- | -- | -- | -- | -- |
| 135.08 | 0.544 | 9.28 | -- | 0.307 | -- | -- | -- | -0.0579 | 10.7 | -- | -- | -- | -- |
| 121.73 | 0.514 | 9.26 | -- | -- | -0.838 | -- | -- | 0.0704 | -- | 19.62 | 808 | -- | -- |
| 140.9 | 0.554 | 9.29 | -- | -- | -- | -- | -- | -0.059 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 6 | 53.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 16 | 53.38 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 20 | 53.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 31 | 53.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 52 | 53.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 55 | 53.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 61 | 53.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 65 | 53.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 78 | 53.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 113 | 54.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 144 | 54.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 153 | 54.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 187 | 54.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 204 | 54.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 214 | 54.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 406 | 55.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 436 | 55.12 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 499 | 55.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 505 | 55.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 521 | 55.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 552 | 55.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 567 | 55.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 589 | 55.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 590 | 55.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 591 | 55.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 595 | 55.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 13 |
| 607 | 55.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 632 | 55.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 638 | 55.45 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 675 | 55.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 5 |
| 699 | 55.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 707 | 55.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 9 |
| 713 | 55.56 | temperature | 20 | 4320 | > th | dose dependent | sin | 21 | NA |
| 726 | 55.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 794 | 55.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 824 | 55.70 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 874 | 55.74 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 936 | 55.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |