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Os04g0574100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Exostosin-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.8 (0.0288) R2 : 0.861
β1 : 1.85 (0.118) R2dD : 0.0991 R2D : -0.0114
β2 : 2.14 (0.0847) R2dC : 0.312 R2C : 0.606
β3 : -2.4 (0.116) R2dE : 0.22 R2E : 0.472
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.05 (0.535) R2dD*E : 0.0361 R2D*E : -0.0558
γ1 : 0.441 (0.0623) R2dN8 : 0.0227 R2N8 : -0.0188
σ : 0.527
deviance : 128.14
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C
peak time of C : 12.3
E
wheather : temperature
threshold : 15.36
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 12.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.52 0.531 7.81 1.79 2.14 -2.41 -0.497 4.39 0.437 12.3 15.44 12 16 13
145.2 0.561 7.82 1.58 2.42 -1.96 -1.54 -- 0.411 12 15.84 15 15.9 13.1
128.14 0.527 7.8 1.85 2.14 -2.4 -- 5.05 0.441 12.3 15.36 13 16 12.9
152.15 0.574 7.85 1.4 1.89 -2.41 -- -- 0.352 12.5 12.1 14 15.9 13
177.19 0.62 7.9 2.07 -- -4.05 -- 6.46 0.373 -- 7.622 222 15.5 12.5
203.47 0.669 7.86 1.12 3.31 -- -1.52 -- 0.147 11.2 -- -- -- --
213.39 0.684 7.86 1.06 3.31 -- -- -- 0.141 11.2 -- -- -- --
170.53 0.608 7.91 1.34 -- -3.8 -- -- 0.261 -- 0.1296 246 15.2 12.4
193.74 0.648 7.9 -- 1.9 -2.08 -- -- 0.182 12.2 9.89 18 15.9 13
899.48 1.4 7.94 0.981 -- -- -- -- 0.113 -- -- -- -- --
243.07 0.729 7.89 -- 3.3 -- -- -- 0.0232 11.2 -- -- -- --
210.41 0.676 7.96 -- -- -3.45 -- -- 0.0858 -- -7.66 233 15.3 12.4
924.88 1.42 7.96 -- -- -- -- -- 0.00363 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.84 temperature 15 10 > th dose dependent rect. 16 13
2 135.92 temperature 15 90 > th dose dependent rect. 15 13
3 136.04 temperature 20 10 > th dose independent rect. 16 13
5 136.34 temperature 20 720 > th dose dependent rect. 16 2
23 141.71 temperature 20 10 > th dose independent rect. 14 15
27 142.03 temperature 30 90 < th dose dependent rect. 15 10
56 145.09 temperature 30 270 < th dose dependent rect. 12 21
57 145.26 radiation 20 14400 < th dose independent rect. 1 5
59 145.30 temperature 20 4320 < th dose independent rect. 20 3
61 145.37 temperature 20 4320 < th dose independent rect. 16 9
62 145.42 wind 3 43200 < th dose dependent rect. 8 4
65 145.46 temperature 20 4320 < th dose independent rect. 17 7
82 145.80 temperature 30 270 < th dose dependent rect. 15 17
83 145.82 temperature 20 4320 > th dose independent rect. 16 9
88 145.85 temperature 20 4320 > th dose independent rect. 15 11
95 145.96 temperature 30 90 < th dose dependent rect. 17 16
96 145.97 radiation 1 14400 < th dose independent rect. 18 12
104 146.08 temperature 10 270 > th dose dependent rect. 7 21
115 146.18 wind 3 43200 < th dose independent rect. 8 7
121 146.33 wind 3 43200 > th dose independent rect. 7 9
123 146.34 wind 3 43200 > th dose independent rect. 8 7
128 146.39 temperature 20 4320 > th dose independent rect. 20 3
130 146.40 wind 5 43200 < th dose dependent rect. 7 9
133 146.43 wind 5 43200 < th dose dependent rect. 8 7
162 146.74 temperature 30 90 < th dose dependent sin 15 NA
163 146.75 radiation 1 14400 > th dose independent rect. 18 12
164 146.75 temperature 15 90 > th dose dependent sin 14 NA
174 146.81 temperature 20 4320 < th dose independent sin 16 NA
177 146.86 wind 1 43200 > th dose dependent rect. 6 10
179 146.87 humidity 90 43200 > th dose dependent rect. 12 3
182 146.88 temperature 30 10 < th dose dependent rect. 17 8
200 147.00 temperature 30 90 < th dose dependent rect. 4 21
213 147.05 radiation 1 14400 > th dose independent rect. 17 15
221 147.09 temperature 10 720 > th dose dependent rect. 7 19
222 147.10 radiation 1 14400 < th dose independent sin 11 NA
224 147.11 temperature 20 4320 > th dose independent sin 16 NA
252 147.23 radiation 1 14400 > th dose independent sin 12 NA
254 147.24 humidity 90 14400 < th dose independent rect. 21 4
289 147.45 radiation 30 4320 < th dose independent rect. 16 16
333 147.64 radiation 10 4320 > th dose dependent rect. 17 13
372 147.81 humidity 90 43200 > th dose independent rect. 11 4
382 147.84 temperature 30 10 < th dose dependent rect. 14 11
423 148.00 wind 1 43200 > th dose dependent sin 1 NA
425 148.01 wind 3 43200 > th dose independent sin 0 NA
429 148.03 wind 5 43200 < th dose dependent sin 0 NA
449 148.09 wind 1 43200 > th dose dependent rect. 9 1
454 148.10 humidity 90 14400 > th dose independent rect. 21 5
457 148.11 radiation 10 4320 > th dose dependent rect. 17 1
486 148.15 humidity 90 14400 > th dose independent rect. 22 3
532 148.28 humidity 90 43200 < th dose independent rect. 12 2
550 148.33 radiation 1 14400 < th dose dependent rect. 16 16
568 148.37 wind 3 43200 < th dose independent sin 1 NA
603 148.45 radiation 1 14400 > th dose independent rect. 16 3
612 148.45 humidity 90 14400 < th dose independent rect. 16 11
641 148.50 radiation 1 14400 < th dose independent rect. 10 23
647 148.51 radiation 1 14400 < th dose dependent sin 12 NA
654 148.52 temperature 10 720 > th dose dependent rect. 16 10
663 148.54 temperature 15 4320 > th dose dependent rect. 20 3
669 148.55 radiation 1 14400 > th dose independent rect. 10 23
697 148.60 wind 3 43200 > th dose independent rect. 7 15
707 148.61 wind 9 43200 < th dose dependent rect. 9 1
725 148.64 radiation 1 14400 < th dose independent rect. 4 21
732 148.65 radiation 1 14400 < th dose independent no NA NA
738 148.65 radiation 1 14400 < th dose independent rect. 22 21
744 148.65 radiation 1 14400 < th dose independent rect. 24 23
749 148.65 radiation 1 14400 < th dose dependent rect. 18 23
750 148.66 radiation 10 4320 < th dose independent rect. 18 7
752 148.66 radiation 1 14400 < th dose independent rect. 4 15
754 148.66 radiation 1 14400 < th dose independent rect. 4 17
758 148.66 radiation 1 14400 < th dose independent rect. 24 19
838 148.73 radiation 1 14400 > th dose independent no NA NA
841 148.73 radiation 1 14400 > th dose independent rect. 4 15
889 148.73 radiation 1 14400 < th dose dependent rect. 16 13
891 148.73 radiation 1 14400 < th dose dependent rect. 18 19
895 148.74 radiation 1 14400 < th dose dependent rect. 18 15
941 148.80 humidity 90 43200 < th dose independent rect. 11 4
942 148.80 radiation 10 4320 < th dose independent rect. 18 9
958 148.82 radiation 1 14400 < th dose dependent rect. 18 17
964 148.84 radiation 1 14400 < th dose dependent rect. 4 4
965 148.84 radiation 1 14400 < th dose dependent rect. 20 12
977 148.85 radiation 1 14400 < th dose dependent rect. 22 10
986 148.86 radiation 1 14400 < th dose dependent rect. 24 8
989 148.87 wind 3 43200 < th dose independent rect. 7 15