Os04g0573900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P450-like protein.
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Os04g0573900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome P450-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.4 | 0.466 | 9.72 | 2.36 | 0.0583 | 1.6 | -0.664 | -12.1 | 1.03 | 6.34 | 30.03 | 4101 | -- | -- |
| 106.64 | 0.485 | 9.49 | 4.37 | 0.0779 | 0.243 | -0.597 | -- | 1.08 | 5.82 | 30.03 | 4101 | -- | -- |
| 99.34 | 0.464 | 9.72 | 2.36 | 0.0705 | 1.59 | -- | -12 | 1.03 | 9.08 | 30.02 | 4100 | -- | -- |
| 106.68 | 0.481 | 9.54 | 3.75 | 0.0514 | 0.583 | -- | -- | 0.841 | 11.1 | 19.4 | 47520 | -- | -- |
| 99.65 | 0.465 | 9.72 | 2.37 | -- | 1.59 | -- | -12 | 1.03 | -- | 30.02 | 4100 | -- | -- |
| 108.61 | 0.489 | 9.49 | 4.4 | 0.027 | -- | -0.689 | -- | 1.07 | 5.92 | -- | -- | -- | -- |
| 109.71 | 0.49 | 9.49 | 4.39 | 0.0407 | -- | -- | -- | 1.07 | 9.58 | -- | -- | -- | -- |
| 105.04 | 0.477 | 9.55 | 3.93 | -- | 0.53 | -- | -- | 0.831 | -- | 21.8 | 24213 | -- | -- |
| 184.13 | 0.632 | 9.78 | -- | 0.0805 | 3.28 | -- | -- | -0.211 | 9.82 | 18.6 | 47520 | -- | -- |
| 109.81 | 0.49 | 9.49 | 4.39 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 618.53 | 1.16 | 9.6 | -- | 0.0927 | -- | -- | -- | 0.582 | 4.99 | -- | -- | -- | -- |
| 184.47 | 0.633 | 9.78 | -- | -- | 3.28 | -- | -- | -0.214 | -- | 18.59 | 47520 | -- | -- |
| 618.98 | 1.16 | 9.6 | -- | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.26 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 4 | 95.55 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 6 | 95.73 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 22 | 95.80 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 36 | 95.83 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 16 | NA |
| 37 | 95.83 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 38 | 95.83 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 46 | 95.84 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 47 | 95.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 63 | 95.84 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 97 | 95.88 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 103 | 95.89 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 111 | 95.90 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 116 | 95.91 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 193 | 95.98 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 15 | NA |
| 207 | 95.99 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 243 | 96.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 279 | 96.04 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 429 | 96.14 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 433 | 96.15 | atmosphere | 1000 | 14400 | > th | dose independent | no | NA | NA |
| 483 | 96.18 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 15 | NA |
| 508 | 96.20 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 529 | 96.21 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 532 | 96.22 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 580 | 96.24 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 595 | 96.25 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 608 | 96.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 639 | 96.28 | atmosphere | 1000 | 14400 | < th | dose independent | no | NA | NA |
| 714 | 96.33 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 717 | 96.33 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 940 | 96.53 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 7 |