Os04g0573300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SBT2 protein (Subtilisin-like protease).
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Os04g0573300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SBT2 protein (Subtilisin-like protease).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.47 | 0.766 | 6.61 | -0.371 | 1.45 | -1.68 | -3.51 | -0.995 | 0.0564 | 15.7 | 52.79 | 698 | -- | -- |
| 266.37 | 0.76 | 6.61 | -0.414 | 1.26 | -1.82 | -3.53 | -- | 0.0363 | 15.6 | 53.32 | 620 | -- | -- |
| 294.11 | 0.799 | 6.62 | -0.217 | 1.98 | -1.13 | -- | -2.52 | 0.0926 | 16.4 | 58.86 | 1100 | -- | -- |
| 298.35 | 0.804 | 6.64 | -0.527 | 2.06 | -1.42 | -- | -- | 0.0201 | 16.5 | 49.33 | 1116 | -- | -- |
| 342.89 | 0.862 | 6.63 | -0.558 | -- | -2.46 | -- | -0.505 | -0.0796 | -- | 59.58 | 410 | -- | -- |
| 313.88 | 0.831 | 6.62 | -0.413 | 1.94 | -- | -2.84 | -- | 0.082 | 16.9 | -- | -- | -- | -- |
| 333.54 | 0.855 | 6.63 | -0.424 | 1.93 | -- | -- | -- | 0.0671 | 17.2 | -- | -- | -- | -- |
| 338.37 | 0.857 | 6.64 | -0.436 | -- | -2.31 | -- | -- | -0.0873 | -- | 61.97 | 396 | -- | -- |
| 304.49 | 0.813 | 6.63 | -- | 2.07 | -1.33 | -- | -- | 0.0471 | 16.6 | 57.08 | 1161 | -- | -- |
| 528.97 | 1.07 | 6.61 | -0.493 | -- | -- | -- | -- | 0.0183 | -- | -- | -- | -- | -- |
| 338.29 | 0.86 | 6.62 | -- | 1.94 | -- | -- | -- | 0.114 | 17.2 | -- | -- | -- | -- |
| 343.22 | 0.863 | 6.63 | -- | -- | -2.29 | -- | -- | -0.0514 | -- | 63.07 | 396 | -- | -- |
| 535.38 | 1.08 | 6.6 | -- | -- | -- | -- | -- | 0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 262.15 | humidity | 90 | 90 | < th | dose independent | rect. | 13 | 18 |
| 3 | 262.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 8 | 264.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 13 | 264.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 15 | 264.41 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 18 | 264.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 24 | 264.79 | humidity | 60 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 36 | 265.18 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 41 | 265.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 43 | 265.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 53 | 265.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 56 | 265.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 67 | 265.75 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 103 | 266.29 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 105 | 266.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 116 | 266.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 134 | 266.72 | humidity | 60 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 136 | 266.74 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 143 | 266.87 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 146 | 266.89 | humidity | 90 | 90 | < th | dose independent | rect. | 15 | 16 |
| 147 | 266.90 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 191 | 267.36 | radiation | 30 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 199 | 267.50 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 205 | 267.55 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 210 | 267.62 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 239 | 267.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 264 | 268.21 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 274 | 268.35 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 300 | 268.49 | humidity | 90 | 720 | < th | dose dependent | sin | 19 | NA |
| 342 | 268.82 | humidity | 70 | 720 | < th | dose independent | rect. | 11 | 22 |
| 345 | 268.88 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 366 | 269.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 424 | 269.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 425 | 269.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 428 | 269.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 433 | 269.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 460 | 269.77 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 468 | 269.84 | radiation | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 471 | 269.84 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 511 | 270.07 | radiation | 1 | 720 | > th | dose dependent | sin | 14 | NA |
| 525 | 270.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 541 | 270.25 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 553 | 270.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 572 | 270.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 585 | 270.44 | radiation | 20 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 587 | 270.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 593 | 270.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 594 | 270.47 | radiation | 20 | 1440 | < th | dose dependent | sin | 22 | NA |
| 609 | 270.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 619 | 270.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 627 | 270.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 639 | 270.61 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 650 | 270.63 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 664 | 270.67 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 698 | 270.77 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 709 | 270.82 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 730 | 270.87 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 758 | 270.99 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 760 | 270.99 | radiation | 1 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 774 | 271.05 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 781 | 271.08 | radiation | 10 | 720 | > th | dose independent | sin | 15 | NA |
| 791 | 271.13 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 11 |
| 802 | 271.19 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 840 | 271.24 | radiation | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 876 | 271.34 | humidity | 70 | 720 | < th | dose independent | sin | 21 | NA |
| 931 | 271.44 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 942 | 271.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 7 |