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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0573100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mandelonitrile lyase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0178) R2 : 0.000954
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0247 (0.0374) R2dN8 : 0.00123 R2N8 : 0.000954
σ : 0.335
deviance : 51.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.56 0.327 3.19 0.12 0.0238 -0.287 -0.34 -0.383 0.0178 5.06 20.3 291 -- --
49 0.326 3.18 0.179 0.0324 -0.242 -0.194 -- 0.0302 5.08 20.3 290 -- --
48.81 0.325 3.19 0.137 0.023 -0.274 -- -0.283 0.022 5.45 20.2 290 -- --
49.07 0.326 3.18 0.18 0.0364 -0.241 -- -- 0.0304 6.85 20.3 290 -- --
48.84 0.326 3.19 0.137 -- -0.279 -- -0.29 0.0234 -- 20.2 290 -- --
50.84 0.334 3.19 0.104 0.0656 -- -0.162 -- -0.0153 4.97 -- -- -- --
50.91 0.334 3.19 0.105 0.0652 -- -- -- -0.0144 5.32 -- -- -- --
49.07 0.326 3.18 0.188 -- -0.24 -- -- 0.0421 -- 20.76 400 -- --
49.87 0.329 3.19 -- 0.0463 -0.204 -- -- 0.00417 6.42 20.3 290 -- --
51.13 0.334 3.19 0.107 -- -- -- -- -0.0128 -- -- -- -- --
51.2 0.335 3.19 -- 0.0669 -- -- -- -0.0261 5.25 -- -- -- --
49.91 0.329 3.19 -- -- -0.183 -- -- 0.0174 -- 21.25 410 -- --
51.43 0.335 3.2 -- -- -- -- -- -0.0247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.55 temperature 25.0 30 > th dose dependent rect. 20 4
3 45.84 temperature 25.0 30 > th dose independent rect. 20 4
8 46.15 humidity 90.0 30 < th dose dependent rect. 20 1
9 46.22 humidity 90.0 10 < th dose independent rect. 20 1
12 46.31 atmosphere 1015.0 30 < th dose dependent rect. 20 1
13 46.33 atmosphere 1005.0 30 > th dose independent rect. 20 1
14 46.33 wind 9.0 30 < th dose dependent rect. 20 1
15 46.34 wind 1.0 30 > th dose independent rect. 20 1
16 46.34 wind 9.0 30 < th dose independent rect. 20 1
17 46.34 temperature 10.0 30 > th dose independent rect. 20 1
20 46.34 temperature 30.0 30 < th dose independent rect. 20 1
21 46.34 humidity 50.0 30 > th dose independent rect. 20 1
24 46.34 atmosphere 995.0 30 > th dose independent rect. 20 1
25 46.34 atmosphere 1010.0 30 < th dose independent rect. 20 1
27 46.34 radiation 1.0 30 < th dose independent rect. 20 1
32 46.34 precipitation 0.1 30 < th dose independent rect. 20 1
33 46.34 temperature 10.0 30 > th dose independent rect. 21 23
35 46.34 radiation 1.0 30 < th dose dependent rect. 20 1
40 46.34 precipitation 0.1 30 < th dose dependent rect. 20 1
45 46.36 temperature 15.0 10 > th dose dependent rect. 20 1
49 46.37 atmosphere 995.0 30 > th dose dependent rect. 20 1
51 46.38 wind 9.0 30 < th dose independent rect. 21 23
55 46.41 wind 1.0 30 > th dose dependent rect. 20 1
56 46.41 humidity 50.0 30 > th dose dependent rect. 20 1
57 46.43 temperature 30.0 30 < th dose dependent rect. 20 1
65 46.47 radiation 10.0 1440 < th dose dependent rect. 21 1
98 46.51 temperature 10.0 1440 > th dose independent rect. 21 1
101 46.51 temperature 30.0 1440 < th dose independent rect. 21 1
105 46.51 humidity 50.0 1440 > th dose independent rect. 21 1
112 46.51 atmosphere 995.0 1440 > th dose independent rect. 21 1
113 46.51 radiation 1.0 1440 < th dose independent rect. 21 1
133 46.51 temperature 10.0 1440 > th dose independent rect. 22 23
138 46.53 radiation 40.0 14400 < th dose dependent rect. 21 1
177 47.28 temperature 25.0 10 > th dose dependent rect. 20 8
187 47.40 precipitation 0.1 30 < th dose independent rect. 21 23
188 47.40 atmosphere 1005.0 10 > th dose dependent rect. 20 3
189 47.40 precipitation 0.1 30 < th dose dependent rect. 21 23
196 47.50 atmosphere 1000.0 30 > th dose independent rect. 21 23
207 47.73 temperature 20.0 90 > th dose independent rect. 23 8
235 47.94 temperature 20.0 30 > th dose independent rect. 23 21
241 48.04 temperature 20.0 270 > th dose independent rect. 15 14
244 48.04 temperature 20.0 270 > th dose independent rect. 21 22
249 48.11 temperature 20.0 270 > th dose independent rect. 21 9
253 48.14 temperature 25.0 90 > th dose independent rect. 19 8
255 48.15 temperature 10.0 30 > th dose dependent rect. 23 21
266 48.26 temperature 20.0 270 > th dose independent rect. 8 23
268 48.28 temperature 20.0 30 > th dose independent rect. 16 15
272 48.29 temperature 20.0 270 < th dose independent rect. 5 19
274 48.30 temperature 20.0 30 < th dose independent rect. 23 1
278 48.30 temperature 20.0 90 > th dose independent rect. 3 16
291 48.32 temperature 15.0 30 > th dose dependent rect. 3 17
300 48.36 radiation 10.0 30 < th dose independent rect. 21 23
305 48.38 temperature 20.0 270 > th dose independent rect. 10 20
308 48.40 temperature 20.0 270 < th dose independent rect. 20 4
309 48.40 atmosphere 1005.0 30 > th dose independent rect. 20 4
322 48.42 temperature 20.0 30 > th dose independent rect. 23 23
325 48.43 temperature 20.0 270 > th dose independent rect. 10 23
345 48.45 temperature 10.0 30 > th dose dependent rect. 21 23
346 48.46 precipitation 0.1 1440 < th dose independent rect. 21 1
348 48.46 temperature 20.0 30 > th dose independent rect. 21 23
349 48.46 precipitation 0.1 1440 < th dose dependent rect. 21 1
367 48.50 humidity 90.0 10 < th dose independent rect. 20 4
371 48.50 atmosphere 1000.0 10 > th dose independent rect. 24 20
374 48.51 atmosphere 1000.0 720 > th dose independent rect. 21 14
381 48.52 temperature 20.0 30 > th dose independent rect. 3 4
385 48.52 temperature 20.0 30 > th dose independent rect. 3 23
392 48.53 atmosphere 995.0 30 > th dose independent rect. 3 17
405 48.55 atmosphere 1000.0 720 > th dose independent rect. 23 10
412 48.56 temperature 15.0 90 > th dose independent rect. 5 22
414 48.56 temperature 25.0 720 < th dose dependent rect. 22 1
415 48.56 temperature 15.0 30 > th dose dependent rect. 3 4
420 48.57 temperature 20.0 30 > th dose independent rect. 10 21
423 48.57 wind 7.0 10 < th dose dependent rect. 20 7
426 48.58 temperature 20.0 30 > th dose independent rect. 14 17
453 48.62 temperature 15.0 270 > th dose independent rect. 5 19
465 48.63 temperature 15.0 90 > th dose dependent rect. 23 8
470 48.64 temperature 15.0 1440 > th dose independent rect. 8 17
475 48.65 temperature 20.0 30 > th dose independent rect. 12 19
477 48.65 temperature 20.0 270 > th dose independent rect. 12 23
484 48.66 temperature 15.0 90 > th dose independent rect. 21 14
487 48.66 temperature 20.0 30 > th dose independent rect. 10 23
494 48.67 wind 5.0 30 < th dose independent rect. 20 7
496 48.68 temperature 20.0 270 > th dose independent rect. 3 1
504 48.68 temperature 20.0 720 > th dose dependent rect. 23 1
509 48.69 humidity 90.0 10 < th dose independent rect. 22 2
517 48.69 temperature 15.0 90 > th dose independent rect. 7 20
526 48.70 temperature 20.0 270 < th dose independent rect. 20 16
550 48.73 temperature 20.0 270 > th dose independent no NA NA
553 48.73 wind 1.0 14400 < th dose dependent rect. 4 3
560 48.75 humidity 90.0 720 < th dose independent rect. 2 2
563 48.75 atmosphere 995.0 90 > th dose independent rect. 11 10
597 48.77 radiation 10.0 10 < th dose dependent rect. 21 23
603 48.79 temperature 20.0 270 > th dose independent sin 10 NA
611 48.79 radiation 10.0 30 < th dose independent rect. 23 21
620 48.80 temperature 20.0 270 < th dose independent rect. 15 9
628 48.80 temperature 20.0 30 > th dose independent rect. 8 23
631 48.80 temperature 15.0 270 > th dose dependent rect. 3 1
652 48.82 atmosphere 1000.0 30 > th dose independent rect. 23 23
654 48.82 wind 1.0 14400 > th dose dependent rect. 23 1
657 48.82 wind 3.0 10 < th dose dependent rect. 22 5
662 48.83 atmosphere 1000.0 30 > th dose independent rect. 24 9
663 48.83 temperature 20.0 270 < th dose independent rect. 20 11
676 48.84 wind 3.0 14400 > th dose independent rect. 23 1
677 48.84 wind 1.0 14400 < th dose independent rect. 6 1
686 48.85 wind 3.0 14400 < th dose independent rect. 23 1
695 48.85 precipitation 0.1 720 < th dose independent rect. 5 12
696 48.85 temperature 20.0 10 < th dose independent rect. 23 14
698 48.85 wind 7.0 30 < th dose independent rect. 3 17
702 48.85 precipitation 0.1 720 < th dose dependent rect. 5 12
718 48.86 wind 7.0 30 < th dose independent rect. 7 20
721 48.86 radiation 10.0 30 < th dose independent rect. 23 23
722 48.86 precipitation 0.1 270 < th dose independent rect. 4 23
723 48.86 wind 5.0 14400 < th dose dependent rect. 23 1
728 48.86 precipitation 0.1 270 < th dose dependent rect. 4 23
743 48.87 temperature 20.0 270 < th dose independent rect. 8 23
744 48.87 humidity 50.0 30 > th dose independent rect. 21 23
755 48.88 temperature 15.0 1440 > th dose independent rect. 21 7
780 48.89 wind 1.0 14400 > th dose independent rect. 5 2
784 48.89 atmosphere 1005.0 30 > th dose independent rect. 20 7
789 48.89 radiation 1.0 270 < th dose independent rect. 24 14
790 48.89 precipitation 0.1 270 < th dose independent rect. 19 14
797 48.89 radiation 10.0 10 < th dose independent rect. 3 17
805 48.89 precipitation 0.1 30 < th dose independent rect. 7 20
815 48.89 radiation 30.0 10 < th dose dependent rect. 3 8
816 48.89 precipitation 0.1 270 < th dose dependent rect. 19 14
817 48.89 radiation 1.0 270 < th dose dependent rect. 23 20
818 48.89 precipitation 0.1 30 < th dose dependent rect. 7 20
821 48.90 humidity 80.0 30 > th dose independent rect. 20 3
825 48.90 precipitation 0.1 30 < th dose independent rect. 20 7
836 48.90 radiation 1.0 270 < th dose independent rect. 23 20
851 48.90 atmosphere 1005.0 10 > th dose dependent rect. 2 2
856 48.90 precipitation 0.1 30 < th dose dependent rect. 20 7
860 48.91 temperature 20.0 720 > th dose independent rect. 23 1
862 48.91 wind 3.0 10 < th dose independent rect. 3 4
863 48.91 radiation 10.0 10 < th dose independent rect. 3 5
878 48.91 humidity 90.0 90 < th dose independent rect. 20 21
888 48.91 radiation 1.0 270 < th dose dependent rect. 24 14
889 48.91 radiation 1.0 90 < th dose dependent rect. 3 16
891 48.92 temperature 20.0 270 < th dose independent no NA NA
892 48.92 wind 1.0 14400 < th dose independent rect. 4 3
893 48.92 humidity 80.0 30 > th dose independent rect. 3 4
896 48.92 temperature 15.0 270 > th dose independent rect. 5 10
900 48.92 humidity 90.0 90 < th dose independent rect. 20 15
907 48.92 precipitation 0.1 270 < th dose independent rect. 4 21
915 48.92 wind 7.0 30 < th dose dependent rect. 3 4
918 48.92 radiation 1.0 30 < th dose dependent rect. 20 7
920 48.92 precipitation 0.1 270 < th dose dependent rect. 4 21
924 48.93 atmosphere 1000.0 270 > th dose independent rect. 24 5
925 48.93 temperature 10.0 30 > th dose independent rect. 20 7
926 48.93 temperature 30.0 30 < th dose independent rect. 20 7
927 48.93 humidity 50.0 30 > th dose independent rect. 20 7
930 48.93 atmosphere 995.0 30 > th dose independent rect. 20 7
932 48.93 radiation 1.0 30 < th dose independent rect. 20 7
945 48.93 atmosphere 1015.0 30 < th dose independent rect. 3 17
956 48.93 temperature 25.0 720 > th dose dependent rect. 3 5
966 48.94 wind 5.0 14400 < th dose independent rect. 11 1
968 48.94 temperature 15.0 1440 > th dose independent rect. 8 9
973 48.94 precipitation 0.1 270 < th dose independent rect. 5 19
982 48.94 radiation 30.0 10 < th dose dependent rect. 3 6
983 48.94 precipitation 0.1 270 < th dose dependent rect. 5 19
984 48.94 wind 9.0 10 < th dose dependent rect. 7 20
986 48.94 temperature 20.0 270 < th dose dependent rect. 4 20
988 48.94 temperature 10.0 30 > th dose dependent rect. 23 23
994 48.95 temperature 20.0 10 < th dose independent rect. 23 9