Os04g0572100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0572100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.77 | 0.586 | 8.13 | -0.693 | 0.175 | 1.58 | 1.16 | -3.99 | 0.441 | 4.55 | 29.7 | 4277 | -- | -- |
| 160.53 | 0.59 | 8.09 | -1.13 | 0.24 | 1.42 | 1.08 | -- | 0.719 | 3.63 | 25.1 | 4123 | -- | -- |
| 158.72 | 0.587 | 8.13 | -0.778 | 0.163 | 1.46 | -- | -3.29 | 0.479 | 5.65 | 29.41 | 4368 | -- | -- |
| 161.93 | 0.593 | 8.19 | -1.28 | 0.23 | 1.22 | -- | -- | 0.623 | 6.21 | 28.5 | 4392 | -- | -- |
| 157.72 | 0.585 | 8.13 | -0.778 | -- | 1.43 | -- | -3.13 | 0.484 | -- | 29.5 | 4933 | -- | -- |
| 199.48 | 0.662 | 8.2 | -1.78 | 0.157 | -- | 0.968 | -- | 0.427 | 5.21 | -- | -- | -- | -- |
| 201.09 | 0.664 | 8.2 | -1.78 | 0.2 | -- | -- | -- | 0.424 | 7.43 | -- | -- | -- | -- |
| 159.21 | 0.588 | 8.22 | -1.37 | -- | 1.05 | -- | -- | 0.42 | -- | 29.4 | 4926 | -- | -- |
| 200.81 | 0.66 | 8.11 | -- | 0.186 | 1.48 | -- | -- | 0.857 | 6.08 | 25.1 | 5744 | -- | -- |
| 203.22 | 0.666 | 8.21 | -1.77 | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
| 284.31 | 0.789 | 8.16 | -- | 0.186 | -- | -- | -- | 0.621 | 8.07 | -- | -- | -- | -- |
| 168.59 | 0.605 | 8.05 | -- | -- | 1.6 | -- | -- | 1.15 | -- | 21.94 | 37067 | -- | -- |
| 286.22 | 0.79 | 8.16 | -- | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 2 | 149.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 15 | 150.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 22 | 151.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 38 | 151.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 45 | 152.04 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 47 | 152.10 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 58 | 152.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 63 | 152.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 68 | 152.36 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 71 | 152.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 114 | 152.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 126 | 153.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 225 | 153.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 226 | 153.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 248 | 154.24 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 271 | 154.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 306 | 154.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 335 | 155.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 378 | 155.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 445 | 155.75 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 486 | 156.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 487 | 156.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 490 | 156.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 492 | 156.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 559 | 156.25 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 562 | 156.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 570 | 156.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 591 | 156.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 795 | 157.00 | temperature | 30 | 4320 | < th | dose independent | sin | 2 | NA |
| 960 | 157.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 965 | 157.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 979 | 157.50 | temperature | 30 | 4320 | > th | dose independent | sin | 2 | NA |