Os04g0571800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0571800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.65 | 0.284 | 10.8 | 0.225 | 0.583 | -0.539 | -0.121 | -0.052 | -0.0504 | 7.11 | 20.47 | 220 | -- | -- |
| 36.66 | 0.282 | 10.8 | 0.233 | 0.585 | -0.534 | -0.11 | -- | -0.0486 | 7.1 | 20.5 | 219 | -- | -- |
| 36.69 | 0.282 | 10.8 | 0.225 | 0.584 | -0.535 | -- | -0.0343 | -0.05 | 7.09 | 20.48 | 219 | -- | -- |
| 36.69 | 0.282 | 10.8 | 0.231 | 0.583 | -0.534 | -- | -- | -0.0493 | 7.09 | 20.49 | 219 | -- | -- |
| 53.45 | 0.34 | 10.8 | 0.25 | -- | -0.526 | -- | 0.0855 | -0.0409 | -- | 20.8 | 380 | -- | -- |
| 46.49 | 0.32 | 10.8 | 0.065 | 0.63 | -- | 0.0144 | -- | -0.153 | 6.57 | -- | -- | -- | -- |
| 46.49 | 0.319 | 10.8 | 0.0652 | 0.63 | -- | -- | -- | -0.153 | 6.57 | -- | -- | -- | -- |
| 53.07 | 0.339 | 10.8 | 0.291 | -- | -0.625 | -- | -- | 0.00256 | -- | 20.71 | 386 | -- | -- |
| 37.94 | 0.287 | 10.8 | -- | 0.577 | -0.483 | -- | -- | -0.067 | 6.98 | 20.6 | 219 | -- | -- |
| 67.14 | 0.383 | 10.8 | 0.0805 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 46.61 | 0.319 | 10.8 | -- | 0.63 | -- | -- | -- | -0.16 | 6.56 | -- | -- | -- | -- |
| 52.22 | 0.337 | 10.8 | -- | -- | -0.44 | -- | -- | 0.0124 | -- | 25.2 | 330 | -- | -- |
| 67.31 | 0.383 | 10.8 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 3 | 29.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 5 | 29.60 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 12 | 30.05 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 45 | 31.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 75 | 32.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 17 |
| 112 | 32.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 132 | 33.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 188 | 33.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 15 |
| 217 | 34.11 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 276 | 34.60 | temperature | 20.0 | 270 | > th | dose independent | sin | 10 | NA |
| 284 | 34.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 304 | 34.76 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 308 | 34.77 | temperature | 15.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 377 | 35.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 398 | 35.26 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 401 | 35.27 | temperature | 20.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 455 | 35.56 | temperature | 20.0 | 270 | < th | dose independent | sin | 10 | NA |
| 477 | 35.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 492 | 35.74 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 12 |
| 495 | 35.76 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 504 | 35.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 513 | 35.83 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 521 | 35.85 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 543 | 35.92 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 558 | 35.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 578 | 36.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 579 | 36.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 587 | 36.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 588 | 36.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 607 | 36.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 610 | 36.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 628 | 36.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 629 | 36.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 631 | 36.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 646 | 36.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 680 | 36.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 695 | 36.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 711 | 36.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 716 | 36.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 717 | 36.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 718 | 36.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 719 | 36.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 723 | 36.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 725 | 36.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 726 | 36.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 729 | 36.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 730 | 36.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 731 | 36.44 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 734 | 36.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 750 | 36.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 752 | 36.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 760 | 36.51 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 778 | 36.56 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 787 | 36.58 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 791 | 36.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 793 | 36.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 807 | 36.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 808 | 36.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 812 | 36.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 813 | 36.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 842 | 36.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 851 | 36.72 | temperature | 20.0 | 720 | > th | dose independent | sin | 15 | NA |
| 854 | 36.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 901 | 36.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 918 | 36.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 922 | 36.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 940 | 36.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 945 | 36.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 947 | 36.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 964 | 36.93 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 988 | 36.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 993 | 37.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 996 | 37.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |