Os04g0571700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0571700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.28 | 0.564 | 3.26 | -0.292 | 0.316 | -0.357 | -0.712 | 0.354 | -0.167 | 6.34 | 91 | 11 | -- | -- |
| 144.52 | 0.56 | 3.26 | -0.28 | 0.317 | -0.332 | -0.636 | -- | -0.16 | 6.53 | 91 | 11 | -- | -- |
| 145.41 | 0.562 | 3.26 | -0.291 | 0.332 | -0.394 | -- | 0.175 | -0.169 | 6.15 | 91.01 | 11 | -- | -- |
| 145.46 | 0.562 | 3.26 | -0.289 | 0.33 | -0.378 | -- | -- | -0.167 | 6.18 | 91 | 11 | -- | -- |
| 149.84 | 0.57 | 3.26 | -0.308 | -- | -0.236 | -- | 0.249 | -0.137 | -- | 91 | 5 | -- | -- |
| 147.32 | 0.569 | 3.25 | -0.318 | 0.227 | -- | -0.759 | -- | -0.105 | 7.41 | -- | -- | -- | -- |
| 148.81 | 0.571 | 3.25 | -0.334 | 0.226 | -- | -- | -- | -0.103 | 8.03 | -- | -- | -- | -- |
| 149.99 | 0.57 | 3.26 | -0.308 | -- | -0.218 | -- | -- | -0.138 | -- | 91 | 5 | -- | -- |
| 147.63 | 0.566 | 3.26 | -- | 0.339 | -0.416 | -- | -- | -0.143 | 6.09 | 91 | 11 | -- | -- |
| 151.61 | 0.575 | 3.25 | -0.332 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 151.75 | 0.576 | 3.24 | -- | 0.224 | -- | -- | -- | -0.0658 | 8.14 | -- | -- | -- | -- |
| 152.35 | 0.575 | 3.25 | -- | -- | -0.25 | -- | -- | -0.106 | -- | 91 | 5 | -- | -- |
| 154.52 | 0.58 | 3.24 | -- | -- | -- | -- | -- | -0.0633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.91 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 138.01 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 3 | 138.65 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 4 |
| 4 | 138.84 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 8 | 139.31 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 18 | 140.26 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 19 | 140.31 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 4 |
| 27 | 140.74 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 30 | 140.92 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 31 | 140.96 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 33 | 141.00 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 35 | 141.02 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 40 | 141.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 43 | 141.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 47 | 141.05 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 53 | 141.05 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 54 | 141.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 75 | 141.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 89 | 141.20 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 90 | 141.20 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 93 | 141.30 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 94 | 141.30 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 100 | 141.33 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 102 | 141.34 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 103 | 141.35 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 107 | 141.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 112 | 141.42 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 118 | 141.45 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 123 | 141.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 125 | 141.48 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 126 | 141.48 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 130 | 141.48 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 132 | 141.48 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 137 | 141.48 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 138 | 141.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 140 | 141.48 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 145 | 141.48 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 147 | 141.49 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 154 | 141.54 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 188 | 141.73 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 190 | 141.75 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 2 |
| 192 | 141.78 | temperature | 20.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 197 | 141.85 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 205 | 141.92 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 206 | 141.92 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 209 | 141.94 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 212 | 141.97 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 214 | 141.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 215 | 141.99 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 217 | 142.00 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 218 | 142.00 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 221 | 142.03 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 223 | 142.04 | temperature | 25.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 232 | 142.08 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 236 | 142.09 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 247 | 142.13 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 248 | 142.13 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 251 | 142.13 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 254 | 142.13 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 255 | 142.13 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 257 | 142.13 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 262 | 142.13 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 263 | 142.13 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 264 | 142.13 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 269 | 142.13 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 270 | 142.14 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 307 | 142.28 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 328 | 142.34 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 353 | 142.39 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 363 | 142.47 | humidity | 80.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 388 | 142.60 | temperature | 25.0 | 270 | < th | dose independent | sin | 15 | NA |
| 433 | 142.70 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 20 | 3 |
| 435 | 142.71 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 445 | 142.78 | temperature | 25.0 | 270 | > th | dose independent | sin | 15 | NA |
| 459 | 142.86 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 3 |
| 472 | 142.91 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 473 | 142.91 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 479 | 142.94 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 486 | 142.96 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 496 | 143.00 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 517 | 143.07 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 630 | 143.36 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 22 |
| 669 | 143.50 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 670 | 143.50 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 674 | 143.53 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 2 |
| 692 | 143.57 | temperature | 25.0 | 90 | > th | dose independent | rect. | 22 | 5 |
| 722 | 143.64 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 723 | 143.64 | temperature | 25.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 757 | 143.67 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 8 |
| 760 | 143.68 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 804 | 143.72 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 823 | 143.75 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 6 |
| 825 | 143.76 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 841 | 143.78 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 862 | 143.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 885 | 143.82 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 891 | 143.84 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 905 | 143.85 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 14 |
| 927 | 143.89 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 938 | 143.90 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 953 | 143.92 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 15 |
| 954 | 143.92 | wind | 1.0 | 10 | > th | dose independent | rect. | 23 | 21 |
| 997 | 143.95 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 14 |