Os04g0571600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os04g0571600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.23 | 0.534 | 14.6 | -1.37 | 1.99 | 1.68 | 1.13 | -3.78 | -0.999 | 19 | 25.1 | 692 | -- | -- |
| 132.53 | 0.536 | 14.6 | -0.798 | 1.93 | 1.51 | 0.297 | -- | -0.972 | 19.2 | 24.47 | 566 | -- | -- |
| 131.23 | 0.534 | 14.5 | -1.06 | 1.92 | 1.61 | -- | -1.75 | -0.931 | 19.2 | 24.96 | 579 | -- | -- |
| 132.15 | 0.535 | 14.5 | -0.791 | 1.96 | 1.46 | -- | -- | -0.862 | 19.2 | 24.9 | 566 | -- | -- |
| 257.45 | 0.747 | 14.5 | -1.31 | -- | 3.16 | -- | -1.77 | -1.11 | -- | 24.56 | 544 | -- | -- |
| 167.21 | 0.606 | 14.5 | -0.494 | 2.58 | -- | 1.09 | -- | -0.747 | 19.1 | -- | -- | -- | -- |
| 170.33 | 0.611 | 14.5 | -0.516 | 2.59 | -- | -- | -- | -0.745 | 19.1 | -- | -- | -- | -- |
| 263.15 | 0.756 | 14.5 | -1.12 | -- | 3.01 | -- | -- | -1.06 | -- | 24.5 | 534 | -- | -- |
| 147.81 | 0.566 | 14.5 | -- | 2.04 | 1.26 | -- | -- | -0.778 | 19.2 | 24.97 | 564 | -- | -- |
| 523.35 | 1.07 | 14.4 | -0.565 | -- | -- | -- | -- | -0.791 | -- | -- | -- | -- | -- |
| 177.35 | 0.623 | 14.5 | -- | 2.59 | -- | -- | -- | -0.687 | 19.1 | -- | -- | -- | -- |
| 294.59 | 0.799 | 14.5 | -- | -- | 2.83 | -- | -- | -0.908 | -- | 24.66 | 521 | -- | -- |
| 531.77 | 1.08 | 14.4 | -- | -- | -- | -- | -- | -0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 126.71 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 4 | 126.91 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 6 | 127.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 9 | 127.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 10 | 127.37 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 14 | 127.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 15 | 127.53 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 19 | 127.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 23 | 127.66 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 27 | 127.73 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 36 | 127.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 45 | 128.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 14 |
| 79 | 128.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 128 | 128.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 131 | 128.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 141 | 128.63 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 160 | 128.75 | temperature | 25 | 720 | > th | dose dependent | sin | 0 | NA |
| 161 | 128.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 166 | 128.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 182 | 128.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 191 | 128.91 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 192 | 128.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 21 |
| 202 | 128.96 | wind | 7 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 215 | 129.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 227 | 129.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 228 | 129.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 242 | 129.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 256 | 129.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 276 | 129.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 292 | 129.38 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 308 | 129.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 312 | 129.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 335 | 129.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 16 |
| 360 | 129.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 378 | 129.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 391 | 129.73 | humidity | 90 | 14400 | > th | dose dependent | sin | 1 | NA |
| 422 | 129.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 425 | 129.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 436 | 129.88 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 451 | 129.93 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 452 | 129.93 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 475 | 129.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 493 | 130.04 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 506 | 130.07 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 528 | 130.12 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 577 | 130.29 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 591 | 130.33 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 622 | 130.43 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 639 | 130.47 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 647 | 130.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 656 | 130.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 659 | 130.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 668 | 130.56 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 676 | 130.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 687 | 130.59 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 712 | 130.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 715 | 130.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 744 | 130.78 | temperature | 15 | 270 | > th | dose dependent | sin | 18 | NA |
| 792 | 130.93 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 796 | 130.94 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 798 | 130.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 804 | 130.97 | wind | 3 | 43200 | < th | dose independent | sin | 6 | NA |
| 816 | 130.99 | wind | 3 | 43200 | > th | dose independent | sin | 6 | NA |
| 875 | 131.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 895 | 131.24 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 938 | 131.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 959 | 131.42 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 983 | 131.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 994 | 131.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 998 | 131.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |