Os04g0570800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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Os04g0570800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.48 | 0.408 | 8.08 | 0.297 | 0.313 | 0.72 | -0.138 | 0.799 | -0.338 | 6.43 | 57 | 4782 | -- | -- |
| 76.38 | 0.407 | 8.08 | 0.314 | 0.308 | 0.734 | -0.209 | -- | -0.32 | 6.4 | 56.86 | 4759 | -- | -- |
| 75.52 | 0.405 | 8.08 | 0.296 | 0.313 | 0.721 | -- | 0.807 | -0.337 | 6.35 | 57.03 | 4781 | -- | -- |
| 76.47 | 0.407 | 8.08 | 0.315 | 0.309 | 0.737 | -- | -- | -0.319 | 6.27 | 56.59 | 4756 | -- | -- |
| 80.11 | 0.417 | 8.08 | 0.302 | -- | 0.677 | -- | 0.784 | -0.319 | -- | 57 | 4293 | -- | -- |
| 86.77 | 0.437 | 8.11 | 0.371 | 0.287 | -- | -0.174 | -- | -0.467 | 6.45 | -- | -- | -- | -- |
| 86.83 | 0.436 | 8.11 | 0.368 | 0.287 | -- | -- | -- | -0.466 | 6.26 | -- | -- | -- | -- |
| 80.78 | 0.419 | 8.08 | 0.291 | -- | 0.671 | -- | -- | -0.304 | -- | 57 | 4271 | -- | -- |
| 76.85 | 0.408 | 8.09 | -- | 0.292 | 0.869 | -- | -- | -0.369 | 6.56 | 52 | 5889 | -- | -- |
| 91.09 | 0.446 | 8.12 | 0.376 | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
| 90.41 | 0.445 | 8.12 | -- | 0.292 | -- | -- | -- | -0.507 | 6.2 | -- | -- | -- | -- |
| 80.99 | 0.419 | 8.09 | -- | -- | 0.887 | -- | -- | -0.361 | -- | 52 | 5771 | -- | -- |
| 94.82 | 0.455 | 8.13 | -- | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.87 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 2 | 73.29 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 4 | 73.31 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 23 | 73.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 24 | 73.81 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 22 | 15 |
| 26 | 73.82 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 27 | 73.82 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 42 | 74.36 | humidity | 50.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 45 | 74.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 47 | 74.53 | humidity | 50.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 65 | 74.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 66 | 74.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 67 | 74.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 68 | 74.83 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 83 | 74.89 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 84 | 74.89 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 86 | 74.89 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 87 | 74.89 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 97 | 74.91 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 100 | 74.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 103 | 74.97 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 107 | 75.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 109 | 75.01 | humidity | 60.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 110 | 75.01 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 133 | 75.04 | humidity | 60.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 143 | 75.07 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 146 | 75.11 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 150 | 75.15 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 184 | 75.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 191 | 75.55 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 197 | 75.60 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 214 | 75.63 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 216 | 75.64 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 220 | 75.69 | humidity | 50.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 230 | 75.74 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 235 | 75.77 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 252 | 75.80 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 330 | 75.94 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 340 | 75.97 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 356 | 76.01 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 16 |
| 372 | 76.03 | radiation | 10.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 380 | 76.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 382 | 76.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 387 | 76.08 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 454 | 76.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 466 | 76.14 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 520 | 76.19 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 543 | 76.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 545 | 76.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 657 | 76.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 736 | 76.38 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 737 | 76.38 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 763 | 76.42 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 767 | 76.43 | humidity | 60.0 | 4320 | < th | dose independent | no | NA | NA |
| 902 | 76.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 932 | 76.49 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 948 | 76.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 961 | 76.51 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 9 | 15 |
| 963 | 76.51 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 9 | 20 |
| 966 | 76.52 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 984 | 76.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 11 | 19 |