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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0570500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0243) R2 : 6.77e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00898 (0.0511) R2dN8 : 8.74e-05 R2N8 : 6.77e-05
σ : 0.457
deviance : 95.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.52 0.386 3.12 -0.517 0.126 5.11 -0.185 -45.3 0.000426 6.83 24.84 11 5.04 0.867
93.65 0.454 3.08 -0.0221 0.138 0.256 -0.338 -- -0.033 6.42 24.58 57 4.92 0.783
67.57 0.383 3.12 -0.521 0.127 5.12 -- -45.4 0.00135 7.55 24.85 11 5.04 0.864
79.65 0.416 3.08 0.0576 0.0172 2.33 -- -- -0.00174 6.33 24.25 53 4.97 0.354
68.41 0.385 3.12 -0.505 -- 5.16 -- -45.1 0.00409 -- 24.82 12 5.05 0.85
94.27 0.455 3.07 -0.0199 0.161 -- -0.367 -- -0.0159 6.3 -- -- -- --
94.52 0.455 3.07 -0.0231 0.163 -- -- -- -0.0141 7.16 -- -- -- --
79.12 0.414 3.08 -0.0248 -- 2.74 -- -- -0.0347 -- 24.24 85 4.96 0.354
78.82 0.414 3.08 -- 0.0785 2.68 -- -- -0.0307 6.32 24.23 58 4.97 0.352
95.92 0.458 3.07 -0.02 -- -- -- -- -0.0112 -- -- -- -- --
94.53 0.455 3.07 -- 0.163 -- -- -- -0.0115 7.16 -- -- -- --
79.14 0.414 3.08 -- -- 2.75 -- -- -0.031 -- 24.24 57 4.97 0.356
95.93 0.457 3.07 -- -- -- -- -- -0.00898 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.55 temperature 25.0 10 > th dose independent rect. 5 1
3 86.40 atmosphere 1005.0 90 < th dose dependent rect. 5 1
17 87.88 temperature 20.0 30 > th dose dependent rect. 4 2
22 88.36 humidity 90.0 10 < th dose independent rect. 4 2
24 88.50 atmosphere 1005.0 30 < th dose dependent rect. 1 6
25 88.52 humidity 90.0 10 < th dose independent rect. 2 4
33 88.85 temperature 20.0 90 < th dose dependent rect. 2 1
45 89.17 atmosphere 1005.0 90 < th dose independent rect. 1 5
49 89.29 atmosphere 1005.0 270 < th dose independent rect. 1 3
51 89.33 atmosphere 1005.0 10 < th dose independent rect. 2 5
57 89.39 atmosphere 1005.0 90 < th dose independent rect. 3 3
68 89.51 wind 1.0 90 > th dose independent rect. 3 2
78 89.62 temperature 25.0 10 > th dose independent rect. 3 3
104 89.88 temperature 30.0 10 < th dose dependent rect. 4 1
105 89.89 wind 1.0 10 > th dose independent rect. 2 4
107 89.89 atmosphere 1015.0 90 < th dose dependent rect. 3 2
113 89.98 temperature 10.0 90 > th dose dependent rect. 3 2
114 90.00 temperature 20.0 90 < th dose independent rect. 2 1
116 90.01 wind 5.0 90 < th dose independent rect. 3 2
129 90.05 radiation 10.0 10 < th dose dependent rect. 3 3
131 90.07 radiation 1.0 90 < th dose independent rect. 3 2
134 90.08 precipitation 0.1 90 < th dose independent rect. 3 2
136 90.08 radiation 10.0 90 < th dose dependent rect. 3 2
137 90.08 precipitation 0.1 90 < th dose dependent rect. 3 2
144 90.13 humidity 80.0 90 > th dose independent rect. 3 2
151 90.15 temperature 10.0 90 > th dose independent rect. 3 2
153 90.15 temperature 30.0 90 < th dose independent rect. 3 2
154 90.15 humidity 50.0 90 > th dose independent rect. 3 2
157 90.15 atmosphere 995.0 90 > th dose independent rect. 3 2
163 90.15 temperature 10.0 90 > th dose independent rect. 5 22
166 90.16 humidity 50.0 90 > th dose dependent rect. 3 2
172 90.18 precipitation 0.1 90 < th dose independent rect. 5 22
177 90.18 precipitation 0.1 90 < th dose dependent rect. 5 22
180 90.20 radiation 10.0 10 < th dose independent rect. 3 3
191 90.25 humidity 80.0 270 < th dose dependent rect. 6 1
197 90.28 humidity 80.0 270 < th dose independent rect. 6 1
208 90.33 temperature 25.0 90 < th dose dependent rect. 8 1
211 90.35 temperature 20.0 90 < th dose independent rect. 8 1
220 90.39 atmosphere 995.0 90 > th dose independent rect. 5 22
224 90.41 wind 9.0 90 < th dose dependent rect. 3 2
229 90.42 temperature 20.0 270 < th dose independent rect. 5 3
235 90.43 wind 9.0 90 < th dose independent rect. 5 22
245 90.51 humidity 90.0 30 > th dose dependent rect. 4 1
259 90.56 temperature 25.0 10 < th dose dependent rect. 8 2
312 90.76 humidity 80.0 1440 > th dose independent rect. 4 1
313 90.76 atmosphere 1005.0 90 > th dose independent rect. 23 8
317 90.77 atmosphere 995.0 90 > th dose dependent rect. 3 2
334 90.79 radiation 1.0 10 < th dose dependent rect. 4 1
344 90.82 wind 9.0 10 < th dose independent rect. 4 1
345 90.82 temperature 10.0 10 > th dose independent rect. 4 1
348 90.82 humidity 50.0 10 > th dose independent rect. 4 1
352 90.82 atmosphere 995.0 10 > th dose independent rect. 4 1
355 90.82 radiation 1.0 10 < th dose independent rect. 4 1
360 90.82 temperature 10.0 10 > th dose independent rect. 5 23
364 90.83 wind 5.0 10 < th dose independent rect. 4 1
366 90.83 precipitation 0.1 10 < th dose independent rect. 4 1
369 90.83 precipitation 0.1 10 < th dose dependent rect. 4 1
379 90.85 temperature 25.0 270 < th dose dependent rect. 5 3
386 90.87 precipitation 0.1 1440 > th dose independent rect. 10 3
388 90.87 precipitation 0.1 1440 > th dose dependent rect. 10 3
402 90.90 humidity 80.0 10 > th dose independent rect. 3 3
405 90.90 wind 9.0 10 < th dose dependent rect. 4 1
421 90.93 wind 9.0 1440 < th dose independent rect. 4 2
422 90.93 temperature 10.0 1440 > th dose independent rect. 4 2
425 90.93 temperature 30.0 1440 < th dose independent rect. 4 2
429 90.93 humidity 50.0 1440 > th dose independent rect. 4 2
438 90.93 atmosphere 995.0 1440 > th dose independent rect. 4 2
439 90.93 atmosphere 1015.0 1440 < th dose independent rect. 4 2
440 90.93 radiation 20.0 1440 < th dose independent rect. 4 2
453 90.93 temperature 10.0 1440 > th dose independent rect. 6 22
490 90.98 wind 3.0 90 > th dose independent rect. 8 1
503 90.99 radiation 40.0 90 < th dose independent rect. 11 18
504 90.99 atmosphere 995.0 10 > th dose dependent rect. 4 1
520 91.03 radiation 10.0 270 < th dose dependent rect. 11 1
534 91.06 humidity 80.0 720 < th dose independent rect. 22 11
538 91.07 precipitation 0.1 1440 > th dose independent rect. 12 1
543 91.07 precipitation 0.1 1440 > th dose dependent rect. 12 1
567 91.11 humidity 80.0 720 > th dose independent rect. 24 5
568 91.11 humidity 90.0 10 < th dose independent rect. 4 6
576 91.12 humidity 50.0 90 > th dose independent rect. 5 22
609 91.15 wind 1.0 10 > th dose independent rect. 15 15
653 91.21 humidity 80.0 90 < th dose independent rect. 8 1
677 91.22 wind 1.0 270 > th dose dependent rect. 5 3
680 91.23 wind 1.0 90 > th dose independent rect. 5 21
727 91.25 wind 1.0 90 > th dose independent rect. 5 6
728 91.25 wind 1.0 30 > th dose dependent rect. 4 1
752 91.26 humidity 80.0 10 < th dose independent rect. 6 4
753 91.26 atmosphere 995.0 10 > th dose independent rect. 6 21
767 91.27 humidity 90.0 10 < th dose independent rect. 2 8
804 91.29 atmosphere 995.0 90 > th dose dependent rect. 5 6
813 91.31 wind 1.0 1440 < th dose independent rect. 17 1
839 91.31 wind 1.0 90 > th dose dependent rect. 8 1
856 91.32 wind 9.0 10 < th dose dependent rect. 3 3
914 91.35 atmosphere 1005.0 30 > th dose independent rect. 23 12
933 91.37 wind 1.0 1440 > th dose independent rect. 17 1
938 91.37 atmosphere 995.0 90 > th dose independent rect. 11 18
939 91.37 wind 1.0 1440 < th dose dependent rect. 17 1
961 91.39 humidity 90.0 10 < th dose independent rect. 2 21
965 91.39 radiation 10.0 10 < th dose dependent rect. 15 15
968 91.40 humidity 50.0 90 > th dose independent rect. 5 6
999 91.42 wind 9.0 90 < th dose independent rect. 11 18