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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0570000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0544) R2 : 0.112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.32 (0.453) R2dE : 0.105 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.115) R2dN8 : 0.00537 R2N8 : 0.00705
σ : 1.02
deviance : 482.06
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.4
memory length : 585
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.8
open length of G : 0.216

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
473.88 1.02 3.41 -0.21 0.289 9.16 0.64 -34.6 -0.145 7.94 999.9 650 22.1 1
478.84 1.02 3.36 0.325 0.369 3.26 0.946 -- -0.0941 8.69 1000 620 23.6 0.0333
475.03 1.02 3.41 -0.191 0.293 9.1 -- -34.2 -0.146 7.53 999.9 635 22.3 0.943
475.57 1.02 3.33 0.265 0.295 3.22 -- -- -0.146 7.56 999.4 570 23.7 0.0667
479.61 1.02 3.41 -0.192 -- 9.09 -- -33.9 -0.139 -- 999.9 633 22.3 0.9
526.15 1.08 3.33 0.359 0.37 -- 0.817 -- -0.189 6.69 -- -- -- --
527.81 1.08 3.34 0.371 0.374 -- -- -- -0.192 6.44 -- -- -- --
480.19 1.02 3.33 0.268 -- 3.28 -- -- -0.14 -- 999.4 551 23.8 0.202
477.42 1.02 3.33 -- 0.295 3.26 -- -- -0.173 7.54 999.4 567 23.7 0.0503
535.09 1.08 3.34 0.381 -- -- -- -- -0.184 -- -- -- -- --
531.44 1.08 3.35 -- 0.379 -- -- -- -0.233 6.39 -- -- -- --
482.06 1.02 3.34 -- -- 3.32 -- -- -0.167 -- 999.4 585 23.8 0.216
538.91 1.08 3.35 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 482.15 atmosphere 1000.0 720 < th dose dependent rect. 21 2
4 482.55 atmosphere 1000.0 90 < th dose dependent rect. 22 10
5 482.63 atmosphere 1000.0 10 < th dose dependent rect. 23 10
18 485.15 atmosphere 1000.0 720 < th dose independent rect. 20 1
36 487.77 atmosphere 1015.0 90 < th dose dependent rect. 6 1
38 487.86 temperature 25.0 270 > th dose independent rect. 3 3
43 488.09 humidity 50.0 270 < th dose independent rect. 11 1
61 488.09 humidity 50.0 270 < th dose dependent rect. 11 1
82 488.71 atmosphere 1000.0 90 < th dose independent rect. 3 5
84 488.88 radiation 40.0 90 < th dose independent rect. 8 22
85 489.01 atmosphere 1015.0 10 < th dose dependent rect. 6 2
88 489.29 atmosphere 1000.0 10 < th dose independent rect. 2 7
97 489.70 atmosphere 1000.0 90 < th dose dependent rect. 3 5
101 489.86 atmosphere 1015.0 90 < th dose dependent rect. 23 9
106 490.05 atmosphere 1015.0 90 < th dose dependent rect. 21 11
107 490.10 temperature 25.0 270 > th dose dependent rect. 3 3
113 490.38 atmosphere 1005.0 10 < th dose independent rect. 6 2
115 490.41 atmosphere 1000.0 10 < th dose dependent rect. 2 7
120 490.71 humidity 80.0 90 > th dose independent rect. 6 1
121 490.71 atmosphere 1005.0 10 < th dose independent rect. 8 1
138 491.19 atmosphere 1000.0 270 < th dose dependent rect. 3 2
139 491.26 atmosphere 1000.0 270 < th dose independent rect. 3 2
144 491.60 radiation 40.0 90 < th dose independent rect. 8 5
147 491.74 temperature 20.0 90 > th dose independent rect. 6 1
150 491.82 temperature 25.0 270 > th dose dependent rect. 4 1
177 492.77 wind 3.0 90 < th dose independent rect. 6 1
180 492.83 temperature 20.0 10 > th dose dependent rect. 6 2
192 493.25 atmosphere 1000.0 10 < th dose independent rect. 24 9
210 493.59 atmosphere 1000.0 270 < th dose dependent sin 10 NA
218 493.84 temperature 15.0 30 > th dose dependent rect. 23 9
252 494.39 wind 5.0 90 < th dose dependent rect. 6 1
259 494.44 temperature 10.0 90 > th dose dependent rect. 21 11
272 494.56 humidity 60.0 30 > th dose independent rect. 8 22
273 494.57 temperature 20.0 10 > th dose independent rect. 6 2
285 494.74 atmosphere 1000.0 90 < th dose independent rect. 5 3
292 494.85 atmosphere 1000.0 90 < th dose dependent rect. 5 3
297 494.93 atmosphere 1000.0 720 < th dose dependent sin 13 NA
303 495.08 atmosphere 995.0 720 > th dose dependent rect. 23 4
307 495.11 atmosphere 1015.0 720 < th dose dependent rect. 20 1
314 495.22 atmosphere 995.0 1440 > th dose independent rect. 14 2
319 495.29 temperature 25.0 30 > th dose dependent rect. 23 8
366 495.75 radiation 40.0 90 < th dose independent rect. 8 15
372 495.80 atmosphere 995.0 1440 > th dose independent rect. 19 21
384 495.97 atmosphere 1000.0 10 < th dose dependent sin 8 NA
411 496.22 humidity 70.0 90 > th dose dependent rect. 6 1
422 496.40 temperature 25.0 1440 > th dose dependent rect. 3 1
434 496.51 atmosphere 1015.0 30 < th dose dependent rect. 13 19
451 496.68 atmosphere 1000.0 10 < th dose independent rect. 22 11
457 496.73 temperature 25.0 1440 > th dose dependent rect. 2 3
503 497.06 humidity 50.0 10 < th dose independent rect. 11 1
596 497.06 humidity 50.0 10 < th dose dependent rect. 11 1
694 497.12 atmosphere 995.0 30 > th dose dependent rect. 8 22
699 497.16 wind 1.0 30 > th dose independent rect. 6 2
738 497.49 radiation 40.0 90 < th dose independent rect. 8 13
772 497.76 atmosphere 1015.0 720 < th dose dependent rect. 20 11
794 498.02 radiation 20.0 90 < th dose independent rect. 6 1
799 498.06 atmosphere 1000.0 10 < th dose dependent rect. 16 17
817 498.25 atmosphere 995.0 1440 > th dose independent rect. 24 16
820 498.26 humidity 50.0 10 < th dose dependent sin 7 NA
838 498.42 atmosphere 995.0 270 > th dose dependent rect. 22 13
841 498.44 radiation 40.0 90 < th dose independent rect. 8 19
853 498.53 radiation 1.0 10 > th dose independent rect. 6 2
854 498.53 atmosphere 995.0 1440 > th dose independent rect. 14 13
859 498.55 atmosphere 995.0 1440 > th dose independent rect. 14 19
860 498.55 temperature 25.0 1440 > th dose dependent rect. 23 7
867 498.61 temperature 25.0 30 > th dose independent rect. 2 6
875 498.67 temperature 15.0 4320 > th dose independent rect. 7 2
889 498.75 radiation 1.0 90 > th dose independent rect. 6 1
906 498.83 temperature 15.0 90 > th dose independent rect. 7 23
910 498.87 atmosphere 995.0 1440 > th dose independent rect. 6 10
920 498.94 atmosphere 995.0 4320 > th dose independent rect. 18 10
924 498.95 precipitation 0.1 90 < th dose independent rect. 6 1
925 498.95 precipitation 0.1 90 < th dose dependent rect. 6 1
940 499.02 temperature 10.0 90 > th dose independent rect. 6 1
942 499.02 temperature 30.0 90 < th dose independent rect. 6 1
943 499.02 humidity 50.0 90 > th dose independent rect. 6 1
945 499.02 atmosphere 995.0 90 > th dose independent rect. 6 1
955 499.04 humidity 60.0 90 > th dose independent rect. 8 4
976 499.12 atmosphere 995.0 4320 > th dose independent rect. 18 13
988 499.16 atmosphere 995.0 1440 > th dose independent rect. 14 7
992 499.20 atmosphere 995.0 1440 < th dose independent rect. 18 21
994 499.21 wind 9.0 1440 < th dose independent rect. 7 2