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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0569500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.45 (0.0333) R2 : 0.262
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.769 (0.0793) R2dC : 0.152 R2C : 0.125
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.568 (0.0701) R2dN8 : 0.137 R2N8 : 0.109
σ : 0.629
deviance : 180.55
__
_____
C
peak time of C : 12.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.96 0.603 5.42 0.28 0.703 0.807 -0.487 -2.57 -0.535 11.3 1.013 16 -- --
169.85 0.612 5.45 0.166 0.697 0.525 -0.66 -- -0.564 11.7 1.088 16 -- --
165.96 0.6 5.42 0.266 0.707 0.818 -- -2.73 -0.535 11.3 1.042 16 -- --
171.7 0.614 5.45 0.139 0.701 0.526 -- -- -0.568 11.5 1.08 16 -- --
196.74 0.653 5.44 0.261 -- 0.942 -- -2.69 -0.539 -- 1.097 16 -- --
178.6 0.627 5.45 0.107 0.768 -- -0.643 -- -0.555 12.3 -- -- -- --
180.38 0.629 5.45 0.0812 0.77 -- -- -- -0.559 12.3 -- -- -- --
201.92 0.665 5.47 0.136 -- 0.659 -- -- -0.576 -- 1.1 16 -- --
172.2 0.615 5.46 -- 0.701 0.514 -- -- -0.583 11.5 1.096 16 -- --
217.66 0.689 5.47 0.0558 -- -- -- -- -0.57 -- -- -- -- --
180.55 0.629 5.45 -- 0.769 -- -- -- -0.568 12.3 -- -- -- --
202.4 0.665 5.47 -- -- 0.647 -- -- -0.591 -- 1.1 16 -- --
217.74 0.689 5.47 -- -- -- -- -- -0.577 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.12 atmosphere 1000.0 90 > th dose dependent rect. 2 1
7 151.87 wind 5.0 90 < th dose independent rect. 2 1
9 152.01 atmosphere 1000.0 90 > th dose independent rect. 2 1
11 152.18 wind 9.0 90 < th dose dependent rect. 2 1
16 152.41 temperature 10.0 90 > th dose independent rect. 2 1
18 152.41 temperature 30.0 90 < th dose independent rect. 2 1
19 152.41 humidity 50.0 90 > th dose independent rect. 2 1
23 152.41 atmosphere 1010.0 90 < th dose independent rect. 2 1
25 152.41 radiation 1.0 90 < th dose independent rect. 2 1
30 152.41 precipitation 0.1 90 < th dose independent rect. 2 1
31 152.41 temperature 10.0 90 > th dose independent rect. 3 23
32 152.41 radiation 1.0 90 < th dose dependent rect. 2 1
37 152.41 precipitation 0.1 90 < th dose dependent rect. 2 1
41 153.17 precipitation 0.1 90 < th dose independent rect. 3 23
42 153.17 precipitation 0.1 90 < th dose dependent rect. 3 23
43 153.34 wind 1.0 90 > th dose independent rect. 2 1
44 153.40 temperature 10.0 90 > th dose dependent rect. 2 1
45 153.60 humidity 50.0 90 > th dose independent rect. 3 23
46 153.86 atmosphere 995.0 90 > th dose independent rect. 3 23
47 154.03 humidity 50.0 90 > th dose dependent rect. 2 1
49 154.68 humidity 90.0 10 > th dose independent rect. 2 4
53 155.06 temperature 30.0 90 < th dose dependent rect. 2 1
59 155.68 humidity 90.0 90 < th dose independent rect. 2 1
72 156.54 wind 9.0 4320 < th dose independent rect. 3 2
75 156.76 humidity 90.0 10 > th dose independent rect. 2 16
81 156.87 temperature 25.0 10 < th dose independent rect. 2 3
83 156.97 precipitation 0.1 10 < th dose independent rect. 2 2
84 156.97 precipitation 0.1 10 < th dose dependent rect. 2 2
86 156.99 temperature 10.0 1440 > th dose independent rect. 3 2
89 156.99 temperature 30.0 1440 < th dose independent rect. 3 2
93 156.99 humidity 50.0 1440 > th dose independent rect. 3 2
102 156.99 atmosphere 995.0 1440 > th dose independent rect. 3 2
103 156.99 radiation 20.0 1440 < th dose independent rect. 3 2
115 156.99 temperature 10.0 1440 > th dose independent rect. 5 22
123 157.11 humidity 90.0 10 > th dose independent rect. 2 12
131 157.36 wind 1.0 10 > th dose independent rect. 4 22
132 157.41 wind 9.0 90 < th dose independent rect. 3 23
135 157.43 temperature 10.0 10 > th dose independent rect. 2 2
141 157.43 humidity 50.0 10 > th dose independent rect. 2 2
149 157.43 atmosphere 1010.0 10 < th dose independent rect. 2 2
153 157.43 radiation 1.0 10 < th dose independent rect. 2 2
163 157.43 temperature 10.0 10 > th dose independent rect. 4 22
165 157.43 radiation 1.0 10 < th dose dependent rect. 2 2
175 157.46 precipitation 0.1 10 < th dose independent rect. 4 22
176 157.46 precipitation 0.1 10 < th dose dependent rect. 4 22
180 157.52 humidity 90.0 10 > th dose independent rect. 2 8
186 157.58 radiation 10.0 10 < th dose dependent rect. 16 10
190 157.82 atmosphere 1015.0 90 < th dose dependent rect. 2 1
192 157.86 radiation 1.0 30 < th dose independent rect. 17 9
195 157.89 atmosphere 995.0 10 > th dose independent rect. 4 22
221 158.54 temperature 30.0 10 < th dose independent rect. 17 9
275 158.70 humidity 80.0 10 > th dose dependent rect. 2 15
337 159.14 atmosphere 1015.0 30 < th dose independent rect. 4 22
356 159.17 radiation 1.0 1440 < th dose independent rect. 3 1
380 159.17 radiation 1.0 1440 < th dose dependent rect. 3 1
429 159.54 humidity 60.0 90 > th dose independent rect. 17 8
432 159.57 humidity 60.0 10 > th dose independent rect. 17 9
437 159.67 atmosphere 995.0 270 > th dose dependent rect. 23 4
441 159.74 humidity 80.0 10 > th dose dependent rect. 2 19
483 160.09 atmosphere 1000.0 270 > th dose independent rect. 23 4
487 160.15 atmosphere 995.0 10 > th dose independent rect. 2 15
492 160.19 wind 9.0 10 < th dose independent rect. 2 15
496 160.24 humidity 50.0 10 > th dose dependent rect. 2 14
498 160.25 atmosphere 995.0 10 > th dose independent rect. 17 9
499 160.25 precipitation 0.1 10 < th dose independent rect. 2 15
500 160.25 precipitation 0.1 10 < th dose dependent rect. 2 15
502 160.28 radiation 10.0 10 < th dose independent rect. 2 4
506 160.30 temperature 10.0 10 > th dose independent rect. 17 9
510 160.30 temperature 10.0 10 > th dose independent rect. 2 15
512 160.30 atmosphere 1015.0 10 < th dose independent rect. 2 15
525 160.39 wind 1.0 10 > th dose independent rect. 17 9
527 160.44 wind 9.0 10 < th dose independent rect. 17 9
529 160.48 precipitation 0.1 10 < th dose independent rect. 17 9
530 160.48 precipitation 0.1 10 < th dose dependent rect. 17 9
532 160.50 wind 3.0 30 < th dose dependent rect. 2 4
536 160.51 precipitation 0.1 270 < th dose independent rect. 4 19
538 160.51 precipitation 0.1 270 < th dose dependent rect. 4 19
553 160.65 temperature 30.0 90 < th dose independent rect. 3 23
555 160.69 precipitation 0.1 270 < th dose independent rect. 23 5
558 160.69 precipitation 0.1 270 < th dose dependent rect. 23 5
564 160.75 atmosphere 1015.0 270 < th dose independent rect. 4 19
565 160.76 precipitation 0.1 270 < th dose independent rect. 3 21
566 160.76 precipitation 0.1 270 < th dose dependent rect. 3 21
575 160.80 wind 9.0 270 < th dose independent rect. 23 5
576 160.80 temperature 10.0 270 > th dose independent rect. 23 5
577 160.80 temperature 30.0 270 < th dose independent rect. 23 5
578 160.80 humidity 50.0 270 > th dose independent rect. 23 5
582 160.80 radiation 1.0 270 < th dose independent rect. 23 5
587 160.80 temperature 10.0 270 > th dose independent rect. 4 19
589 160.80 radiation 1.0 270 < th dose dependent rect. 23 5
606 160.89 temperature 10.0 270 > th dose independent rect. 24 3
608 160.89 temperature 30.0 270 < th dose independent rect. 24 3
609 160.89 humidity 50.0 270 > th dose independent rect. 24 3
613 160.89 radiation 1.0 270 < th dose independent rect. 24 3
618 160.89 temperature 10.0 270 > th dose independent rect. 3 21
619 160.89 radiation 1.0 270 < th dose dependent rect. 24 3
624 160.90 atmosphere 1015.0 270 < th dose independent rect. 24 3
639 160.97 radiation 10.0 30 < th dose dependent rect. 2 15
750 161.28 humidity 70.0 10 > th dose dependent rect. 2 4
751 161.28 humidity 50.0 90 > th dose dependent rect. 17 8
754 161.31 wind 9.0 90 < th dose dependent rect. 17 8
758 161.35 radiation 10.0 90 < th dose dependent rect. 1 6
768 161.42 humidity 50.0 10 > th dose dependent rect. 17 9
771 161.45 radiation 1.0 90 < th dose independent rect. 1 15
816 161.55 humidity 80.0 10 > th dose dependent rect. 2 10
821 161.57 temperature 10.0 1440 > th dose independent rect. 18 9
824 161.57 humidity 50.0 1440 > th dose independent rect. 18 9
826 161.57 radiation 20.0 1440 < th dose independent rect. 18 9
838 161.57 temperature 10.0 1440 > th dose independent rect. 3 15
844 161.58 humidity 50.0 270 > th dose dependent rect. 24 3
846 161.59 atmosphere 995.0 270 > th dose independent rect. 4 19
861 161.68 wind 9.0 270 < th dose independent rect. 4 19
891 161.74 atmosphere 1015.0 270 < th dose independent rect. 23 5
908 161.82 radiation 10.0 4320 < th dose dependent rect. 19 8
918 161.87 wind 1.0 270 > th dose independent rect. 23 4
928 161.92 humidity 90.0 10 < th dose independent sin 5 NA
934 161.95 humidity 50.0 90 > th dose independent rect. 1 15
964 162.04 humidity 50.0 270 > th dose dependent rect. 23 5
991 162.10 wind 9.0 270 < th dose independent rect. 3 21