FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0568300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0129) R2 : 0.0151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0719 (0.0272) R2dN8 : 0.0195 R2N8 : 0.0151
σ : 0.243
deviance : 27.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.77 0.243 2.85 -0.121 0.00355 0.535 0.0561 -4.24 0.0777 22.3 30.1 6 -- --
27.1 0.244 2.83 0.0177 0.000874 0.0362 0.0672 -- 0.0752 22.1 30.1 6 -- --
26.78 0.241 2.85 -0.125 0.00578 0.559 -- -4.4 0.0769 0.579 30.1 5 -- --
27.1 0.242 2.83 0.0145 0.00339 0.049 -- -- 0.0756 0.189 30.1 6 -- --
26.79 0.241 2.85 -0.123 -- 0.54 -- -4.28 0.0774 -- 30.1 5 -- --
27.11 0.244 2.84 0.0193 0.000117 -- -0.0681 -- 0.0738 9.61 -- -- -- --
27.12 0.244 2.84 0.0168 0.000508 -- -- -- 0.0737 7.6 -- -- -- --
27.1 0.242 2.83 0.0143 -- 0.0475 -- -- 0.0755 -- 30.1 6 -- --
27.11 0.242 2.84 -- 0.00661 0.0537 -- -- 0.074 3.82 30.03 6 -- --
27.12 0.243 2.84 0.0168 -- -- -- -- 0.0737 -- -- -- -- --
27.13 0.244 2.84 -- 0.000715 -- -- -- 0.0719 5.94 -- -- -- --
27.11 0.243 2.84 -- -- 0.0495 -- -- 0.074 -- 30.1 6 -- --
27.13 0.243 2.84 -- -- -- -- -- 0.0719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.82 temperature 25.0 30 > th dose independent rect. 4 1
4 25.88 temperature 25.0 90 > th dose dependent rect. 4 1
5 25.90 humidity 90.0 10 < th dose independent rect. 4 1
8 25.96 wind 1.0 30 > th dose dependent rect. 4 1
10 26.14 temperature 25.0 10 > th dose independent rect. 20 9
12 26.21 wind 1.0 30 < th dose dependent rect. 5 3
14 26.25 temperature 10.0 1440 > th dose independent rect. 22 7
17 26.25 temperature 30.0 1440 < th dose independent rect. 22 7
21 26.25 humidity 50.0 1440 > th dose independent rect. 22 7
28 26.25 atmosphere 995.0 1440 > th dose independent rect. 22 7
29 26.25 radiation 20.0 1440 < th dose independent rect. 22 7
41 26.25 temperature 10.0 1440 > th dose independent rect. 5 17
44 26.26 temperature 10.0 30 > th dose dependent rect. 21 7
46 26.28 wind 3.0 10 < th dose independent rect. 20 1
50 26.29 wind 1.0 30 > th dose independent rect. 4 1
53 26.30 temperature 10.0 1440 > th dose independent rect. 21 1
56 26.30 temperature 30.0 1440 < th dose independent rect. 21 1
60 26.30 humidity 50.0 1440 > th dose independent rect. 21 1
66 26.30 atmosphere 995.0 1440 > th dose independent rect. 21 1
67 26.30 radiation 1.0 1440 < th dose independent rect. 21 1
87 26.30 temperature 10.0 1440 > th dose independent rect. 22 23
90 26.30 radiation 10.0 1440 < th dose dependent rect. 21 1
101 26.30 atmosphere 1000.0 30 > th dose dependent rect. 17 4
105 26.31 temperature 30.0 90 < th dose independent rect. 21 20
108 26.32 temperature 25.0 30 > th dose independent rect. 20 1
111 26.33 wind 3.0 30 > th dose independent rect. 20 1
112 26.33 humidity 90.0 30 < th dose independent rect. 20 1
113 26.33 temperature 30.0 90 < th dose independent rect. 9 8
115 26.33 wind 1.0 30 < th dose dependent rect. 5 1
116 26.33 temperature 20.0 30 > th dose dependent rect. 20 1
118 26.33 atmosphere 1005.0 30 > th dose dependent rect. 20 1
129 26.34 humidity 80.0 30 > th dose independent rect. 20 1
131 26.34 precipitation 0.1 30 < th dose independent rect. 21 7
134 26.34 atmosphere 995.0 270 > th dose dependent rect. 17 1
138 26.34 precipitation 0.1 30 < th dose dependent rect. 21 7
143 26.35 atmosphere 1005.0 30 > th dose independent rect. 20 1
144 26.35 radiation 10.0 270 < th dose independent rect. 17 1
145 26.35 atmosphere 1010.0 10 < th dose independent rect. 4 5
146 26.35 wind 9.0 30 < th dose independent rect. 21 7
147 26.35 temperature 10.0 30 > th dose independent rect. 21 7
148 26.35 temperature 30.0 30 < th dose independent rect. 21 7
149 26.35 humidity 50.0 30 > th dose independent rect. 21 7
152 26.35 atmosphere 995.0 30 > th dose independent rect. 21 7
154 26.35 radiation 1.0 30 < th dose independent rect. 21 7
159 26.35 temperature 10.0 30 > th dose independent rect. 4 17
161 26.35 humidity 50.0 30 > th dose independent rect. 4 17
162 26.35 atmosphere 1000.0 30 > th dose independent rect. 4 17
163 26.35 atmosphere 1015.0 30 < th dose independent rect. 4 17
164 26.35 precipitation 0.1 30 < th dose independent rect. 4 17
165 26.35 wind 9.0 30 < th dose independent rect. 21 23
166 26.35 wind 1.0 30 > th dose dependent rect. 20 1
173 26.35 radiation 1.0 30 < th dose dependent rect. 21 7
178 26.35 precipitation 0.1 30 < th dose dependent rect. 4 17
182 26.36 wind 9.0 1440 < th dose independent rect. 21 1
184 26.36 temperature 10.0 30 > th dose independent rect. 20 1
186 26.36 temperature 30.0 30 < th dose independent rect. 20 1
187 26.36 humidity 50.0 30 > th dose independent rect. 20 1
190 26.36 atmosphere 995.0 30 > th dose independent rect. 20 1
192 26.36 atmosphere 1010.0 30 < th dose independent rect. 20 1
194 26.36 radiation 1.0 30 < th dose independent rect. 20 1
199 26.36 precipitation 0.1 30 < th dose independent rect. 20 1
200 26.36 humidity 80.0 90 > th dose independent rect. 17 4
201 26.36 radiation 10.0 30 < th dose independent rect. 17 4
204 26.36 temperature 10.0 30 > th dose independent rect. 21 23
205 26.36 humidity 50.0 30 > th dose dependent rect. 20 1
207 26.36 radiation 1.0 30 < th dose dependent rect. 20 1
212 26.36 precipitation 0.1 30 < th dose dependent rect. 20 1
214 26.37 wind 1.0 30 < th dose independent rect. 5 3
216 26.37 temperature 25.0 10 > th dose independent rect. 20 4
237 26.37 radiation 1.0 10 < th dose independent rect. 4 17
240 26.37 wind 7.0 30 < th dose dependent rect. 20 1
243 26.37 humidity 90.0 30 < th dose dependent rect. 20 1
254 26.38 radiation 40.0 30 < th dose independent rect. 17 16
260 26.39 humidity 80.0 10 > th dose independent rect. 18 3
262 26.39 humidity 50.0 30 > th dose independent rect. 17 16
267 26.39 atmosphere 1015.0 30 < th dose dependent rect. 20 1
270 26.40 atmosphere 1000.0 270 > th dose independent rect. 17 1
273 26.40 humidity 50.0 30 > th dose independent rect. 17 4
276 26.40 atmosphere 995.0 30 > th dose independent rect. 9 8
277 26.40 radiation 1.0 30 < th dose independent rect. 13 8
282 26.40 radiation 1.0 270 > th dose independent rect. 17 13
284 26.40 atmosphere 1010.0 10 < th dose independent rect. 17 16
286 26.40 wind 9.0 30 < th dose independent rect. 4 17
290 26.40 radiation 10.0 30 < th dose dependent rect. 17 4
295 26.40 radiation 10.0 90 < th dose dependent rect. 15 6
297 26.40 radiation 10.0 90 < th dose dependent rect. 13 8
299 26.41 precipitation 0.1 270 < th dose independent rect. 17 1
301 26.41 wind 1.0 30 > th dose independent rect. 17 4
302 26.41 temperature 10.0 30 > th dose independent rect. 17 4
305 26.41 atmosphere 1000.0 30 > th dose independent rect. 17 4
306 26.41 atmosphere 1010.0 30 < th dose independent rect. 17 4
313 26.41 precipitation 0.1 30 < th dose independent rect. 17 4
317 26.41 wind 1.0 30 > th dose independent rect. 9 8
318 26.41 temperature 10.0 30 > th dose independent rect. 9 8
320 26.41 atmosphere 1015.0 30 < th dose independent rect. 9 8
322 26.41 precipitation 0.1 30 < th dose independent rect. 9 8
325 26.41 temperature 10.0 30 > th dose independent rect. 17 16
326 26.41 atmosphere 995.0 30 > th dose independent rect. 17 16
329 26.41 precipitation 0.1 30 < th dose independent rect. 17 16
331 26.41 temperature 10.0 30 > th dose independent rect. 21 20
332 26.41 atmosphere 995.0 30 > th dose independent rect. 21 20
334 26.41 precipitation 0.1 270 < th dose dependent rect. 17 1
335 26.41 precipitation 0.1 30 < th dose dependent rect. 17 4
337 26.41 wind 9.0 30 < th dose dependent rect. 21 7
339 26.41 precipitation 0.1 30 < th dose dependent rect. 9 8
340 26.41 radiation 10.0 90 < th dose dependent rect. 10 11
341 26.41 precipitation 0.1 30 < th dose dependent rect. 17 16
342 26.41 temperature 10.0 30 > th dose dependent rect. 4 17
343 26.41 radiation 1.0 10 < th dose dependent rect. 4 17
344 26.41 wind 1.0 30 < th dose dependent rect. 5 20
345 26.42 wind 1.0 270 > th dose independent rect. 17 1
347 26.42 temperature 10.0 270 > th dose independent rect. 17 1
349 26.42 humidity 50.0 270 > th dose independent rect. 17 1
352 26.42 atmosphere 1010.0 270 < th dose independent rect. 17 1
364 26.42 temperature 25.0 10 > th dose independent rect. 23 6
382 26.42 precipitation 0.1 30 < th dose independent rect. 21 20
383 26.42 temperature 10.0 270 > th dose independent rect. 18 23
384 26.42 temperature 30.0 30 < th dose dependent rect. 20 1
386 26.42 radiation 30.0 270 < th dose dependent rect. 17 1
388 26.42 humidity 50.0 90 > th dose dependent rect. 17 4
390 26.42 temperature 20.0 10 > th dose dependent rect. 4 5
395 26.42 humidity 50.0 30 > th dose dependent rect. 21 7
401 26.42 precipitation 0.1 30 < th dose dependent rect. 21 20
404 26.43 humidity 70.0 270 > th dose independent rect. 17 1
436 26.43 wind 9.0 30 < th dose independent rect. 9 8
445 26.43 wind 9.0 30 < th dose independent rect. 21 20
448 26.43 humidity 50.0 90 > th dose independent rect. 21 20
450 26.43 wind 9.0 270 < th dose independent rect. 18 23
451 26.43 precipitation 0.1 270 < th dose independent rect. 18 23
456 26.43 temperature 10.0 30 > th dose dependent rect. 17 4
472 26.43 atmosphere 995.0 30 > th dose dependent rect. 21 7
473 26.43 radiation 40.0 30 < th dose dependent rect. 17 16
477 26.43 precipitation 0.1 270 < th dose dependent rect. 18 23
488 26.44 radiation 1.0 30 > th dose independent rect. 9 8
490 26.44 wind 9.0 30 < th dose independent rect. 17 16
493 26.44 atmosphere 995.0 270 > th dose independent rect. 18 23
494 26.44 temperature 10.0 270 > th dose dependent rect. 17 1
508 26.45 wind 9.0 270 < th dose independent rect. 17 1
511 26.45 temperature 30.0 270 < th dose independent rect. 17 1
513 26.45 wind 9.0 30 < th dose independent rect. 17 4
514 26.45 temperature 10.0 1440 > th dose independent rect. 18 4
518 26.45 temperature 30.0 90 < th dose independent rect. 17 4
520 26.45 humidity 50.0 1440 > th dose independent rect. 18 4
522 26.45 radiation 20.0 1440 < th dose independent rect. 18 4
535 26.45 temperature 25.0 90 > th dose independent rect. 21 6
541 26.45 humidity 50.0 90 > th dose independent rect. 9 8
556 26.45 temperature 10.0 1440 > th dose independent rect. 22 20
565 26.45 wind 3.0 270 < th dose dependent rect. 2 5
581 26.46 temperature 25.0 720 > th dose independent rect. 4 1
628 26.46 temperature 10.0 1440 > th dose independent rect. 10 8
642 26.46 temperature 10.0 1440 > th dose independent rect. 18 16
645 26.46 humidity 70.0 30 > th dose independent rect. 17 16
648 26.46 wind 1.0 30 > th dose independent rect. 4 17
653 26.46 radiation 40.0 30 < th dose independent rect. 4 17
687 26.47 temperature 25.0 10 > th dose independent rect. 22 2
698 26.47 temperature 25.0 10 > th dose independent rect. 20 13
730 26.48 wind 1.0 270 < th dose independent rect. 5 1
746 26.48 wind 1.0 10 > th dose independent rect. 17 16
747 26.48 temperature 30.0 90 < th dose independent rect. 17 16
754 26.48 wind 1.0 270 > th dose dependent rect. 17 1
768 26.48 radiation 40.0 1440 < th dose dependent rect. 22 7
781 26.49 radiation 1.0 270 > th dose independent rect. 17 1
786 26.49 humidity 90.0 30 < th dose independent rect. 17 4
787 26.49 atmosphere 995.0 1440 > th dose independent rect. 18 4
789 26.49 temperature 20.0 30 > th dose independent rect. 4 5
796 26.49 atmosphere 1010.0 10 < th dose independent rect. 4 8
802 26.49 wind 1.0 270 > th dose independent rect. 18 23
845 26.50 atmosphere 995.0 1440 > th dose independent rect. 18 16
846 26.50 wind 1.0 270 > th dose independent rect. 21 17
874 26.51 humidity 50.0 1440 > th dose independent rect. 18 16
891 26.51 temperature 10.0 270 > th dose dependent rect. 1 8
894 26.51 temperature 10.0 30 > th dose dependent rect. 17 16
904 26.52 atmosphere 1015.0 30 < th dose independent rect. 21 7
910 26.52 temperature 25.0 10 > th dose independent rect. 17 12
925 26.52 radiation 10.0 10 < th dose independent rect. 21 20
926 26.52 wind 1.0 270 > th dose independent rect. 19 21
931 26.52 wind 9.0 30 < th dose dependent rect. 17 4
944 26.52 radiation 20.0 10 < th dose dependent rect. 21 13
952 26.53 wind 1.0 90 > th dose independent rect. 21 6
965 26.53 humidity 90.0 10 < th dose dependent rect. 4 1
977 26.53 radiation 40.0 30 < th dose dependent rect. 4 17
979 26.54 temperature 25.0 1440 < th dose independent rect. 4 1