Os04g0566600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os04g0566600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.48 | 0.518 | 6.86 | -1.99 | 0.717 | 2.13 | 1.16 | 6.27 | -0.248 | 0.31 | 0.204 | 1436 | -- | -- |
| 130.21 | 0.531 | 6.8 | -1.52 | 0.759 | 0.713 | 1.17 | -- | -0.225 | 23.3 | 1.677 | 3756 | -- | -- |
| 123.48 | 0.518 | 6.86 | -2.06 | 0.459 | 2.32 | -- | 6.97 | -0.268 | 0.727 | 0.1999 | 1487 | -- | -- |
| 133.14 | 0.537 | 6.74 | -1.48 | 0.898 | 1.03 | -- | -- | -0.0913 | 22.5 | 2 | 3781 | -- | -- |
| 129.47 | 0.53 | 6.83 | -1.93 | -- | 2.57 | -- | 6.88 | -0.203 | -- | 0.1984 | 1541 | -- | -- |
| 136.91 | 0.549 | 6.76 | -1.6 | 0.666 | -- | 0.996 | -- | -0.227 | 0.248 | -- | -- | -- | -- |
| 141 | 0.556 | 6.77 | -1.64 | 0.666 | -- | -- | -- | -0.233 | 0.595 | -- | -- | -- | -- |
| 142.85 | 0.557 | 6.73 | -1.44 | -- | 1.21 | -- | -- | -0.12 | -- | 1.39 | 1725 | -- | -- |
| 138.52 | 0.548 | 6.77 | -- | 0.762 | 1.37 | -- | -- | 0.174 | 0.026 | 0.009764 | 47171 | -- | -- |
| 168.84 | 0.607 | 6.75 | -1.61 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 211.59 | 0.68 | 6.73 | -- | 0.642 | -- | -- | -- | -0.0507 | 0.471 | -- | -- | -- | -- |
| 162.91 | 0.594 | 6.63 | -- | -- | 1.35 | -- | -- | 0.329 | -- | 0.002448 | 47520 | -- | -- |
| 237.48 | 0.719 | 6.71 | -- | -- | -- | -- | -- | -0.0425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.25 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 117.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 3 | 117.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 7 | 118.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 11 | 119.02 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 12 | 119.31 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 19 | 119.71 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 23 | 119.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 24 | 119.82 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 25 | 119.83 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 29 | 120.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 34 | 120.19 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 37 | 120.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 38 | 120.26 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 5 | 7 |
| 43 | 120.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 45 | 120.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 48 | 120.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 59 | 120.60 | humidity | 90.0 | 30 | < th | dose independent | rect. | 7 | 11 |
| 67 | 120.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 68 | 120.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 76 | 120.75 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 88 | 120.87 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 89 | 120.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 91 | 120.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 100 | 120.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 104 | 120.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 106 | 121.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 108 | 121.02 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 109 | 121.02 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 113 | 121.03 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 139 | 121.12 | humidity | 80.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 149 | 121.14 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 166 | 121.21 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 173 | 121.23 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 10 |
| 174 | 121.24 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 176 | 121.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 184 | 121.28 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 191 | 121.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 210 | 121.38 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 229 | 121.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 230 | 121.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 241 | 121.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 244 | 121.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 247 | 121.50 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 15 |
| 248 | 121.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 249 | 121.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 258 | 121.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 275 | 121.59 | humidity | 80.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 280 | 121.60 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 7 |
| 290 | 121.64 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 300 | 121.66 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 311 | 121.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 326 | 121.72 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 344 | 121.76 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 369 | 121.82 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 9 |
| 465 | 122.01 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 478 | 122.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 516 | 122.08 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 545 | 122.12 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 599 | 122.18 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 628 | 122.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 639 | 122.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 678 | 122.28 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 687 | 122.29 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 726 | 122.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 736 | 122.35 | humidity | 90.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 760 | 122.37 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 767 | 122.38 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 786 | 122.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 799 | 122.41 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 828 | 122.45 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 849 | 122.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 915 | 122.56 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 924 | 122.57 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 16 |
| 930 | 122.58 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 19 | NA |
| 952 | 122.61 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 953 | 122.61 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 972 | 122.62 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |