Os04g0566400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os04g0566400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.08 | 0.301 | 10.4 | 0.37 | 0.0993 | 1.19 | 0.778 | 0.315 | -0.191 | 21.2 | 24.64 | 674 | -- | -- |
| 41.22 | 0.299 | 10.4 | 0.401 | 0.0964 | 1.17 | 0.693 | -- | -0.198 | 20.9 | 24.6 | 656 | -- | -- |
| 42.21 | 0.303 | 10.3 | 0.395 | 0.166 | 1.16 | -- | -0.0795 | -0.179 | 17.1 | 24.6 | 525 | -- | -- |
| 42.22 | 0.303 | 10.3 | 0.387 | 0.167 | 1.17 | -- | -- | -0.181 | 17.1 | 24.6 | 520 | -- | -- |
| 43.33 | 0.307 | 10.3 | 0.405 | -- | 1.12 | -- | -0.12 | -0.191 | -- | 24.43 | 640 | -- | -- |
| 60.4 | 0.364 | 10.4 | 0.105 | 0.101 | -- | -0.688 | -- | -0.412 | 11.5 | -- | -- | -- | -- |
| 62.23 | 0.369 | 10.4 | 0.0797 | 0.121 | -- | -- | -- | -0.413 | 13.6 | -- | -- | -- | -- |
| 43.35 | 0.307 | 10.3 | 0.384 | -- | 1.13 | -- | -- | -0.194 | -- | 24.4 | 637 | -- | -- |
| 45.8 | 0.315 | 10.4 | -- | 0.146 | 1.01 | -- | -- | -0.233 | 16.5 | 24.69 | 490 | -- | -- |
| 63.12 | 0.371 | 10.4 | 0.0748 | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
| 62.39 | 0.37 | 10.4 | -- | 0.12 | -- | -- | -- | -0.422 | 13.6 | -- | -- | -- | -- |
| 46.8 | 0.319 | 10.4 | -- | -- | 0.977 | -- | -- | -0.263 | -- | 24.4 | 613 | -- | -- |
| 63.27 | 0.371 | 10.4 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 6 | 38.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 9 | 38.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 11 | 38.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 18 | 38.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 21 | 39.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 11 |
| 37 | 39.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 51 | 39.27 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 59 | 39.32 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 64 | 39.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 130 | 39.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 137 | 39.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 160 | 40.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 208 | 40.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 267 | 40.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 286 | 40.77 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 295 | 40.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 329 | 40.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 373 | 41.21 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 388 | 41.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 397 | 41.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 496 | 41.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 663 | 42.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 682 | 42.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 692 | 42.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 722 | 42.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 723 | 42.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 800 | 42.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 941 | 43.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 970 | 43.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 12 |