Os04g0566300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0566300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.24 | 0.765 | 4.11 | 2.33 | 0.0134 | 215 | -0.254 | 448 | -0.0505 | 15.2 | 2 | 3 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 276.37 | 0.779 | 3.02 | -0.0852 | 0.00387 | -- | -0.26 | -- | -0.0731 | 20.7 | -- | -- | -- | -- |
| 276.56 | 0.779 | 3.02 | -0.0777 | 0.0216 | -- | -- | -- | -0.0737 | 2.23 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 276.59 | 0.777 | 3.02 | -0.0768 | -- | -- | -- | -- | -0.0731 | -- | -- | -- | -- | -- |
| 276.72 | 0.778 | 3.02 | -- | 0.0202 | -- | -- | -- | -0.065 | 2.15 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 276.75 | 0.776 | 3.02 | -- | -- | -- | -- | -- | -0.0646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.03 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 5 | 254.03 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 9 | 254.17 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 11 | 254.42 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 14 | 255.08 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 1 |
| 16 | 255.58 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 17 | 255.96 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 18 | 256.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 23 | 256.74 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 58 | 258.53 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 63 | 258.85 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 73 | 259.44 | atmosphere | 1010.0 | 270 | < th | dose independent | sin | 12 | NA |
| 110 | 260.04 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 112 | 260.04 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 124 | 260.16 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 133 | 260.49 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 145 | 260.58 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 146 | 260.60 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 1 |
| 149 | 260.65 | atmosphere | 1010.0 | 270 | > th | dose independent | sin | 12 | NA |
| 151 | 260.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 11 |
| 154 | 260.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 5 |
| 158 | 260.85 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 164 | 260.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 234 | 261.60 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 245 | 261.70 | temperature | 15.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 251 | 261.73 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 258 | 261.80 | temperature | 20.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 259 | 261.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 7 |
| 263 | 261.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 264 | 261.83 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 287 | 262.02 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 292 | 262.11 | wind | 5.0 | 30 | > th | dose independent | rect. | 22 | 8 |
| 303 | 262.18 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 377 | 262.31 | temperature | 25.0 | 720 | < th | dose independent | rect. | 12 | 5 |
| 400 | 262.39 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 404 | 262.43 | humidity | 80.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 406 | 262.43 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 408 | 262.43 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 442 | 262.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 455 | 262.76 | wind | 5.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 464 | 262.79 | wind | 5.0 | 30 | > th | dose dependent | rect. | 24 | 4 |
| 484 | 262.88 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 5 |
| 499 | 262.98 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 2 |
| 501 | 262.98 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 537 | 263.07 | temperature | 25.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 543 | 263.11 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 633 | 263.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 638 | 263.18 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 640 | 263.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 8 |
| 660 | 263.22 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 662 | 263.22 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 2 | 2 |
| 665 | 263.23 | wind | 5.0 | 10 | > th | dose dependent | rect. | 22 | 3 |
| 674 | 263.27 | wind | 3.0 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 694 | 263.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 707 | 263.39 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 9 |
| 726 | 263.47 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 733 | 263.47 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 754 | 263.50 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 760 | 263.51 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 772 | 263.58 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 792 | 263.63 | temperature | 20.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 798 | 263.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 817 | 263.67 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 11 |
| 840 | 263.74 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 5 |
| 868 | 263.75 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 889 | 263.76 | temperature | 15.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 908 | 263.80 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 919 | 263.85 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 927 | 263.88 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 949 | 263.96 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 10 |
| 980 | 264.08 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 987 | 264.09 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 993 | 264.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 996 | 264.11 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 12 | 1 |