Os04g0564300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0564300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.58 | 0.605 | 6.94 | -2.47 | 0.308 | 1.42 | 0.848 | 2 | -0.641 | 5.61 | 20.33 | 1423 | -- | -- |
| 168.67 | 0.605 | 7 | -2.98 | 0.324 | 1.43 | 0.56 | -- | -0.772 | 5.83 | 21.9 | 1441 | -- | -- |
| 166.77 | 0.601 | 6.93 | -2.45 | 0.317 | 1.44 | -- | 2.07 | -0.637 | 6.84 | 20.4 | 1377 | -- | -- |
| 169.82 | 0.607 | 7.01 | -3.03 | 0.309 | 1.49 | -- | -- | -0.79 | 6.85 | 21.7 | 1395 | -- | -- |
| 171.93 | 0.611 | 6.94 | -2.4 | -- | 1.44 | -- | 2.21 | -0.623 | -- | 20.33 | 1368 | -- | -- |
| 245.33 | 0.734 | 6.93 | -2.49 | 0.386 | -- | 1.17 | -- | -0.444 | 4.84 | -- | -- | -- | -- |
| 248.56 | 0.738 | 6.93 | -2.5 | 0.404 | -- | -- | -- | -0.449 | 5.52 | -- | -- | -- | -- |
| 175.06 | 0.616 | 7.01 | -3.03 | -- | 1.51 | -- | -- | -0.789 | -- | 21.83 | 1383 | -- | -- |
| 390.08 | 0.92 | 6.91 | -- | 0.33 | 0.783 | -- | -- | -0.305 | 6.79 | 22.6 | 1301 | -- | -- |
| 257.06 | 0.749 | 6.93 | -2.48 | -- | -- | -- | -- | -0.439 | -- | -- | -- | -- | -- |
| 413.01 | 0.951 | 6.87 | -- | 0.364 | -- | -- | -- | -0.171 | 5.81 | -- | -- | -- | -- |
| 392.83 | 0.923 | 6.85 | -- | -- | 0.794 | -- | -- | -0.0455 | -- | 28.7 | 1500 | -- | -- |
| 419.89 | 0.956 | 6.87 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 3 | 162.54 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 22 | 164.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 46 | 165.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 67 | 165.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 69 | 165.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 88 | 165.64 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 165.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 99 | 165.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 101 | 165.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 108 | 165.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 113 | 165.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 136 | 165.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 165 | 166.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 170 | 166.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 205 | 166.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 215 | 166.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 218 | 166.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 229 | 166.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 282 | 166.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 368 | 167.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 414 | 168.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 430 | 168.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 656 | 168.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 886 | 169.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 889 | 169.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 909 | 169.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 998 | 169.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |