Os04g0563900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0563900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.7 | 0.733 | 4.24 | -1.75 | 1.12 | 1.7 | -0.307 | 19.3 | -0.455 | 21.8 | 8.798 | 644 | -- | -- |
| 265.7 | 0.765 | 4.35 | -1.61 | 1.18 | -2.18 | -0.759 | -- | -0.523 | 21.8 | 8.798 | 644 | -- | -- |
| 243.98 | 0.727 | 4.24 | -1.73 | 1.12 | 1.72 | -- | 19.8 | -0.453 | 21.7 | 8.8 | 628 | -- | -- |
| 249.42 | 0.736 | 4.33 | -1.56 | 1.09 | -2.66 | -- | -- | -0.505 | 21.7 | 8.046 | 477 | -- | -- |
| 316.66 | 0.829 | 4.2 | -1.67 | -- | 1.11 | -- | 19.7 | -0.424 | -- | 8.8 | 604 | -- | -- |
| 281.26 | 0.786 | 4.36 | -1.75 | 1.2 | -- | -0.739 | -- | -0.567 | 21.6 | -- | -- | -- | -- |
| 283.3 | 0.788 | 4.36 | -1.72 | 1.2 | -- | -- | -- | -0.565 | 21.6 | -- | -- | -- | -- |
| 315.82 | 0.828 | 4.3 | -1.3 | -- | -2.96 | -- | -- | -0.451 | -- | 7.2 | 542 | -- | -- |
| 300.59 | 0.807 | 4.28 | -- | 1.07 | -3 | -- | -- | -0.245 | 21.6 | 7.5 | 468 | -- | -- |
| 368.9 | 0.897 | 4.32 | -1.71 | -- | -- | -- | -- | -0.568 | -- | -- | -- | -- | -- |
| 361.38 | 0.889 | 4.31 | -- | 1.2 | -- | -- | -- | -0.374 | 21.5 | -- | -- | -- | -- |
| 355.23 | 0.878 | 4.27 | -- | -- | -3.12 | -- | -- | -0.337 | -- | 6.2 | 555 | -- | -- |
| 446.21 | 0.986 | 4.28 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.09 | wind | 9.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 4 | 244.17 | wind | 9.0 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 16 | 244.55 | wind | 9.0 | 720 | < th | dose independent | sin | 20 | NA |
| 18 | 244.74 | wind | 9.0 | 720 | > th | dose independent | rect. | 11 | 12 |
| 21 | 244.75 | wind | 9.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 30 | 244.77 | wind | 9.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 35 | 245.13 | wind | 9.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 39 | 245.29 | wind | 9.0 | 720 | < th | dose independent | no | NA | NA |
| 44 | 245.38 | wind | 9.0 | 720 | > th | dose independent | sin | 20 | NA |
| 94 | 246.07 | wind | 9.0 | 720 | > th | dose independent | rect. | 17 | 23 |
| 112 | 246.23 | wind | 9.0 | 720 | > th | dose independent | rect. | 21 | 22 |
| 121 | 246.29 | wind | 9.0 | 720 | > th | dose independent | no | NA | NA |
| 187 | 246.35 | wind | 9.0 | 720 | > th | dose independent | rect. | 1 | 18 |
| 233 | 246.54 | wind | 7.0 | 270 | < th | dose independent | sin | 17 | NA |
| 240 | 246.56 | wind | 7.0 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 245 | 246.60 | wind | 7.0 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 283 | 246.73 | wind | 9.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 357 | 247.06 | wind | 9.0 | 720 | > th | dose dependent | no | NA | NA |
| 442 | 247.13 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 505 | 247.24 | wind | 9.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 542 | 247.40 | wind | 9.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 630 | 248.55 | wind | 9.0 | 720 | > th | dose dependent | rect. | 13 | 3 |
| 643 | 248.62 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 652 | 248.66 | wind | 7.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 680 | 248.83 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 697 | 248.92 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 2 |
| 724 | 249.09 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 926 | 249.70 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 971 | 249.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 13 |