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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0563000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF246, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.7 (0.0398) R2 : 0.419
β1 : 1.18 (0.146) R2dD : 0.086 R2D : 0.0671
β2 : 1.68 (0.102) R2dC : 0.345 R2C : 0.332
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.217 (0.0851) R2dN8 : 0.0111 R2N8 : -0.00509
σ : 0.749
deviance : 256.02
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.88 0.715 5.71 1.05 1.65 -1.1 1.76 -2.18 0.266 16.3 1.09 1442 -- --
234.32 0.713 5.69 1.3 1.61 -0.868 1.83 -- 0.28 16.6 1.529 1383 -- --
240.07 0.722 5.71 1.05 1.64 -1.08 -- -2.1 0.266 16.3 1.32 1432 -- --
243.43 0.727 5.7 1.32 1.63 -0.907 -- -- 0.309 16.5 1.53 1395 -- --
379.47 0.907 5.7 1.04 -- -1.16 -- -1.86 0.263 -- 1.53 1390 -- --
246.76 0.736 5.7 1.16 1.67 -- 1.84 -- 0.207 16.3 -- -- -- --
256.02 0.749 5.7 1.18 1.68 -- -- -- 0.217 16.2 -- -- -- --
383.9 0.913 5.68 1.2 -- -1.16 -- -- 0.328 -- 1.889 1388 -- --
281.99 0.782 5.71 -- 1.89 -0.712 -- -- 0.193 16.5 9.715 2136 -- --
407.72 0.944 5.69 1.11 -- -- -- -- 0.172 -- -- -- -- --
292.49 0.8 5.73 -- 1.65 -- -- -- 0.0856 16.3 -- -- -- --
389.77 0.923 5.71 -- -- 0.78 -- -- 0.0793 -- 18.97 4203 -- --
440.18 0.979 5.71 -- -- -- -- -- 0.049 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.24 precipitation 0.1 270 < th dose independent rect. 1 10
2 219.24 precipitation 0.1 270 < th dose dependent rect. 1 10
3 220.33 wind 7.0 270 < th dose independent rect. 1 10
4 221.04 temperature 15.0 270 > th dose independent rect. 1 10
5 222.00 humidity 50.0 270 > th dose independent rect. 1 10
6 222.42 wind 9.0 270 < th dose independent rect. 11 14
7 222.49 radiation 40.0 270 < th dose dependent rect. 15 4
8 222.49 radiation 40.0 270 < th dose dependent rect. 14 6
10 222.53 radiation 30.0 270 < th dose independent rect. 14 6
11 222.60 radiation 20.0 270 < th dose independent rect. 15 4
13 222.71 radiation 1.0 720 > th dose independent rect. 18 11
15 222.77 wind 5.0 43200 < th dose dependent rect. 24 7
17 222.78 atmosphere 995.0 270 > th dose independent rect. 1 10
18 222.78 atmosphere 1015.0 270 < th dose independent rect. 1 10
19 222.78 temperature 10.0 270 > th dose independent rect. 11 14
22 222.93 wind 3.0 43200 < th dose independent rect. 1 4
26 223.03 wind 3.0 43200 > th dose independent rect. 1 6
28 223.06 wind 3.0 43200 < th dose independent rect. 1 6
29 223.06 wind 3.0 43200 > th dose independent rect. 1 8
32 223.13 wind 3.0 43200 < th dose independent rect. 1 8
35 223.15 wind 3.0 43200 > th dose independent rect. 1 4
43 223.29 wind 9.0 14400 < th dose independent rect. 6 5
58 223.39 precipitation 0.1 270 < th dose independent rect. 2 18
59 223.39 precipitation 0.1 270 < th dose dependent rect. 2 18
66 223.44 wind 1.0 43200 > th dose dependent rect. 24 7
70 223.48 wind 1.0 270 > th dose independent rect. 15 5
72 223.49 wind 9.0 270 < th dose dependent rect. 15 5
74 223.50 atmosphere 1010.0 270 < th dose independent rect. 15 5
76 223.53 wind 5.0 43200 < th dose dependent rect. 24 4
79 223.56 atmosphere 1015.0 270 < th dose dependent rect. 16 3
104 223.75 precipitation 0.1 270 < th dose independent rect. 15 5
105 223.75 precipitation 0.1 270 < th dose independent rect. 1 20
106 223.75 precipitation 0.1 270 < th dose dependent rect. 15 5
107 223.75 precipitation 0.1 270 < th dose dependent rect. 1 20
113 223.77 temperature 10.0 270 > th dose independent rect. 15 5
116 223.77 temperature 10.0 270 > th dose independent rect. 20 19
142 223.90 wind 9.0 14400 > th dose dependent rect. 6 5
154 223.97 wind 9.0 270 < th dose independent rect. 20 19
163 224.02 wind 1.0 43200 > th dose dependent rect. 4 3
170 224.07 atmosphere 995.0 270 > th dose independent rect. 20 19
184 224.13 wind 9.0 270 < th dose independent rect. 15 5
217 224.22 wind 1.0 270 > th dose independent rect. 16 3
230 224.31 wind 9.0 14400 < th dose independent rect. 9 2
233 224.32 atmosphere 1015.0 270 < th dose dependent rect. 15 5
245 224.36 wind 9.0 14400 > th dose dependent rect. 9 2
279 224.49 wind 9.0 14400 > th dose independent rect. 7 4
298 224.55 wind 9.0 270 < th dose dependent rect. 16 3
301 224.56 atmosphere 1015.0 90 < th dose dependent rect. 17 5
303 224.57 temperature 10.0 270 > th dose independent rect. 16 3
305 224.57 atmosphere 1010.0 270 < th dose independent rect. 16 3
308 224.57 temperature 10.0 270 > th dose independent rect. 19 21
337 224.65 wind 9.0 270 < th dose independent rect. 19 21
352 224.69 wind 9.0 43200 < th dose dependent rect. 23 14
355 224.70 precipitation 0.1 270 < th dose independent rect. 24 22
358 224.70 precipitation 0.1 270 < th dose dependent rect. 24 22
368 224.73 radiation 10.0 90 < th dose independent rect. 3 19
375 224.75 wind 9.0 14400 > th dose independent rect. 9 2
390 224.78 wind 1.0 43200 > th dose dependent rect. 23 14
391 224.79 precipitation 0.1 10 < th dose independent rect. 2 10
393 224.79 precipitation 0.1 10 < th dose dependent rect. 2 10
403 224.82 wind 9.0 270 < th dose independent rect. 16 3
418 224.86 humidity 50.0 270 > th dose dependent rect. 21 4
424 224.89 atmosphere 995.0 270 > th dose independent rect. 15 5
425 224.89 wind 7.0 10 < th dose independent rect. 2 10
426 224.89 temperature 15.0 270 > th dose independent rect. 2 18
462 224.98 precipitation 0.1 270 < th dose independent rect. 16 3
466 224.98 precipitation 0.1 270 < th dose dependent rect. 16 3
478 225.02 radiation 40.0 270 < th dose independent rect. 2 18
487 225.04 humidity 50.0 270 > th dose dependent rect. 20 6
508 225.09 wind 9.0 43200 < th dose dependent sin 7 NA
546 225.18 wind 1.0 43200 > th dose dependent sin 7 NA
574 225.27 temperature 10.0 270 > th dose independent rect. 20 6
576 225.27 temperature 30.0 270 < th dose independent rect. 20 6
577 225.27 humidity 50.0 270 > th dose independent rect. 20 6
580 225.27 atmosphere 995.0 270 > th dose independent rect. 20 6
581 225.27 radiation 1.0 270 < th dose independent rect. 20 6
587 225.27 atmosphere 1015.0 270 < th dose independent rect. 2 18
591 225.27 wind 1.0 43200 > th dose dependent rect. 24 4
593 225.27 radiation 1.0 270 < th dose dependent rect. 20 6
599 225.28 wind 9.0 270 < th dose independent rect. 20 6
617 225.36 wind 3.0 43200 > th dose independent sin 7 NA
620 225.36 wind 5.0 90 < th dose independent rect. 3 19
666 225.46 radiation 1.0 720 > th dose independent rect. 18 1
690 225.50 wind 3.0 43200 < th dose independent sin 7 NA
727 225.59 wind 1.0 43200 < th dose dependent rect. 24 12
730 225.60 temperature 15.0 270 > th dose independent rect. 1 20
740 225.62 atmosphere 1015.0 270 < th dose independent rect. 1 20
753 225.63 radiation 20.0 90 < th dose dependent rect. 3 19
778 225.70 atmosphere 995.0 270 > th dose independent rect. 16 3
800 225.73 humidity 50.0 30 > th dose independent rect. 17 5
812 225.76 temperature 15.0 270 > th dose independent rect. 21 4
816 225.77 temperature 30.0 270 < th dose independent rect. 21 4
817 225.77 humidity 50.0 270 > th dose independent rect. 21 4
820 225.77 atmosphere 995.0 270 > th dose independent rect. 21 4
821 225.77 radiation 1.0 270 < th dose independent rect. 21 4
829 225.77 radiation 1.0 270 < th dose dependent rect. 21 4
838 225.78 wind 9.0 270 < th dose independent rect. 21 4
851 225.80 radiation 40.0 270 < th dose independent rect. 1 9
884 225.87 atmosphere 995.0 270 > th dose independent rect. 19 21
887 225.88 precipitation 0.1 270 < th dose independent rect. 20 6
890 225.88 precipitation 0.1 270 < th dose dependent rect. 20 6
917 225.93 atmosphere 995.0 90 > th dose independent rect. 17 5
919 225.93 precipitation 0.1 270 < th dose independent rect. 11 14
922 225.93 precipitation 0.1 270 < th dose dependent rect. 11 14
932 225.98 precipitation 0.1 270 < th dose independent rect. 16 14
933 225.98 precipitation 0.1 270 < th dose dependent rect. 16 14
941 226.00 wind 9.0 1440 < th dose independent rect. 3 7
985 226.12 wind 9.0 270 < th dose independent rect. 1 20