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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0562800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF630 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.0368) R2 : 0.344
β1 : -0.864 (0.135) R2dD : 0.0629 R2D : 0.0645
β2 : -- (--) R2dC : -- R2C : --
β3 : 10.5 (0.694) R2dE : 0.275 R2E : 0.268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0786) R2dN8 : 0.00687 R2N8 : 0.0115
σ : 0.689
deviance : 218.75
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 32.58
memory length : 66
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.63
open length of G : 2.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.37 0.68 3.85 -1.57 0.467 22.4 0.604 -141 0.169 5.88 32.31 71 10.5 0.75
747.82 1.27 3.93 -0.967 0.753 21.7 1.2 -- 0.269 5.28 32.78 62 10.6 0.651
206.77 0.67 3.84 -1.48 0.423 22.7 -- -141 0.0939 5.21 32.39 71 10.5 0.65
241.7 0.724 4.01 -0.555 0.454 9.68 -- -- 0.128 5.33 32.09 71 9.65 1.33
217.21 0.686 3.85 -1.45 -- 23.1 -- -146 0.167 -- 32.5 70 10.4 0.661
297.6 0.809 3.76 -0.867 0.432 -- 1.03 -- 0.146 6.96 -- -- -- --
299.21 0.81 3.77 -0.853 0.463 -- -- -- 0.141 5.81 -- -- -- --
218.75 0.689 3.8 -0.864 -- 10.5 -- -- 0.148 -- 32.58 66 8.63 2.38
255.69 0.745 4.01 -- 0.454 10 -- -- -0.00134 4.66 32.09 70 9.65 1.33
310.31 0.823 3.78 -0.839 -- -- -- -- 0.152 -- -- -- -- --
318.39 0.835 3.75 -- 0.45 -- -- -- 0.236 5.9 -- -- -- --
237.3 0.717 3.75 -- -- 9.58 -- -- 0.272 -- 32.6 66 8.64 2.4
328.88 0.846 3.75 -- -- -- -- -- 0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.81 temperature 30.0 90 > th dose dependent rect. 10 1
2 258.91 temperature 30.0 90 > th dose independent rect. 10 1
4 275.07 temperature 30.0 10 > th dose dependent rect. 12 1
8 277.06 radiation 10.0 10 > th dose dependent rect. 10 2
23 277.61 radiation 30.0 10 > th dose independent rect. 10 2
26 278.14 radiation 30.0 90 > th dose dependent rect. 10 1
34 278.73 radiation 10.0 90 > th dose dependent rect. 10 2
77 280.94 radiation 1.0 720 > th dose dependent rect. 12 1
79 281.13 radiation 40.0 720 < th dose independent rect. 14 7
102 281.58 wind 1.0 90 > th dose independent rect. 12 15
103 281.61 radiation 30.0 90 > th dose independent rect. 10 2
106 281.86 radiation 10.0 90 > th dose independent rect. 12 22
109 281.98 radiation 1.0 90 > th dose dependent rect. 12 22
137 282.38 humidity 60.0 720 > th dose dependent rect. 24 2
140 282.54 wind 9.0 90 < th dose independent rect. 12 15
148 282.72 radiation 20.0 720 > th dose independent rect. 12 1
173 283.14 humidity 90.0 30 < th dose dependent rect. 12 22
177 283.24 humidity 80.0 720 > th dose independent rect. 24 2
185 283.35 wind 9.0 90 < th dose independent rect. 3 9
186 283.36 humidity 90.0 720 < th dose dependent rect. 12 1
187 283.38 radiation 40.0 720 < th dose dependent rect. 14 6
191 283.42 precipitation 0.1 90 < th dose independent rect. 12 15
193 283.42 precipitation 0.1 90 < th dose dependent rect. 12 15
202 283.59 temperature 10.0 90 > th dose independent rect. 3 9
203 283.59 atmosphere 995.0 90 > th dose independent rect. 3 9
204 283.59 atmosphere 1015.0 90 < th dose independent rect. 3 9
205 283.59 temperature 10.0 90 > th dose independent rect. 12 15
207 283.61 precipitation 0.1 90 < th dose independent rect. 3 9
209 283.61 precipitation 0.1 90 < th dose dependent rect. 3 9
213 283.64 temperature 10.0 90 > th dose dependent rect. 3 9
224 283.82 radiation 1.0 720 > th dose dependent rect. 12 4
235 283.95 humidity 80.0 90 < th dose independent rect. 12 22
253 284.02 radiation 40.0 10 < th dose independent rect. 7 10
254 284.03 temperature 20.0 30 > th dose independent rect. 17 14
258 284.06 wind 9.0 90 < th dose independent rect. 12 12
276 284.10 atmosphere 1000.0 90 > th dose independent rect. 15 21
283 284.12 temperature 10.0 10 > th dose dependent rect. 3 10
289 284.21 wind 9.0 720 < th dose dependent rect. 24 2
291 284.23 wind 7.0 270 < th dose independent rect. 12 2
296 284.27 atmosphere 1000.0 720 > th dose independent rect. 24 2
298 284.29 humidity 90.0 720 < th dose independent rect. 12 2
300 284.30 wind 1.0 90 > th dose independent rect. 12 12
330 284.51 wind 9.0 10 < th dose independent rect. 13 11
333 284.54 radiation 40.0 90 > th dose dependent sin 9 NA
347 284.63 wind 9.0 270 < th dose dependent rect. 12 1
357 284.69 humidity 90.0 90 < th dose independent rect. 12 17
366 284.74 precipitation 0.1 10 < th dose independent rect. 13 14
367 284.74 precipitation 0.1 10 < th dose dependent rect. 13 14
368 284.75 wind 9.0 10 < th dose independent rect. 3 10
369 284.75 wind 9.0 90 < th dose independent rect. 24 12
390 284.83 radiation 1.0 720 > th dose dependent rect. 12 17
403 284.85 atmosphere 1000.0 90 > th dose independent rect. 24 12
406 284.86 precipitation 0.1 90 < th dose independent rect. 12 12
409 284.86 precipitation 0.1 90 < th dose dependent rect. 12 12
414 284.90 wind 7.0 90 < th dose independent rect. 12 5
415 284.90 precipitation 0.1 10 < th dose independent rect. 3 10
416 284.90 precipitation 0.1 10 < th dose dependent rect. 3 10
417 284.90 temperature 10.0 90 > th dose dependent rect. 12 15
418 284.91 temperature 10.0 90 > th dose dependent rect. 24 12
423 284.93 wind 9.0 90 < th dose dependent rect. 12 5
429 284.96 temperature 10.0 10 > th dose independent rect. 3 10
431 284.96 atmosphere 995.0 10 > th dose independent rect. 3 10
432 284.96 atmosphere 1015.0 10 < th dose independent rect. 3 10
433 284.96 temperature 10.0 10 > th dose independent rect. 13 14
444 285.02 temperature 10.0 720 > th dose dependent rect. 12 2
453 285.06 temperature 15.0 720 > th dose independent rect. 12 2
458 285.10 precipitation 0.1 720 < th dose independent rect. 12 2
459 285.10 temperature 10.0 90 > th dose independent rect. 12 12
460 285.10 temperature 10.0 90 > th dose independent rect. 24 12
462 285.10 atmosphere 1015.0 90 < th dose independent rect. 24 12
463 285.10 precipitation 0.1 720 < th dose dependent rect. 12 2
474 285.14 precipitation 0.1 720 < th dose independent rect. 24 2
476 285.14 precipitation 0.1 90 < th dose independent rect. 24 12
478 285.14 precipitation 0.1 720 < th dose dependent rect. 24 2
479 285.14 precipitation 0.1 90 < th dose dependent rect. 24 12
492 285.19 temperature 10.0 10 > th dose dependent rect. 24 13
493 285.20 wind 9.0 720 < th dose independent rect. 24 2
494 285.20 temperature 10.0 720 > th dose independent rect. 24 2
495 285.20 temperature 30.0 720 < th dose independent rect. 24 2
496 285.20 humidity 50.0 720 > th dose independent rect. 24 2
500 285.20 radiation 1.0 720 < th dose independent rect. 24 2
505 285.20 temperature 10.0 720 > th dose independent rect. 2 22
507 285.20 radiation 1.0 720 < th dose dependent rect. 24 2
515 285.23 atmosphere 1015.0 270 < th dose dependent rect. 12 1
520 285.27 atmosphere 995.0 90 > th dose independent rect. 12 15
526 285.32 atmosphere 995.0 720 > th dose independent rect. 12 2
527 285.32 atmosphere 1015.0 720 < th dose independent rect. 12 2
528 285.32 temperature 10.0 720 > th dose independent rect. 14 22
532 285.33 radiation 40.0 720 < th dose independent rect. 14 15
547 285.41 humidity 50.0 720 > th dose independent rect. 12 2
556 285.43 wind 1.0 720 > th dose independent rect. 12 2
609 285.56 atmosphere 1015.0 30 < th dose dependent rect. 12 5
623 285.57 precipitation 0.1 10 < th dose independent rect. 13 11
625 285.57 precipitation 0.1 10 < th dose dependent rect. 13 11
631 285.60 temperature 20.0 30 > th dose independent rect. 17 19
640 285.64 temperature 10.0 90 > th dose dependent rect. 12 12
642 285.65 radiation 20.0 720 > th dose independent rect. 12 5
751 285.74 humidity 60.0 720 > th dose independent rect. 2 7
761 285.77 precipitation 0.1 10 < th dose independent rect. 24 13
762 285.77 precipitation 0.1 10 < th dose dependent rect. 24 13
763 285.78 temperature 10.0 1440 > th dose independent rect. 1 12
766 285.78 temperature 10.0 1440 > th dose independent rect. 13 12
769 285.78 atmosphere 995.0 1440 > th dose independent rect. 1 12
770 285.78 atmosphere 1015.0 90 < th dose independent rect. 12 15
772 285.80 temperature 10.0 10 > th dose independent rect. 13 11
773 285.80 temperature 10.0 10 > th dose independent rect. 24 13
779 285.81 atmosphere 1015.0 10 < th dose independent rect. 24 13
786 285.83 humidity 90.0 10 < th dose dependent rect. 10 2
787 285.83 temperature 10.0 90 > th dose dependent rect. 12 4
848 285.95 humidity 90.0 90 < th dose independent rect. 12 12
869 285.96 precipitation 0.1 720 < th dose independent rect. 14 22
871 285.96 precipitation 0.1 720 < th dose dependent rect. 14 22
873 285.97 radiation 10.0 30 > th dose dependent sin 12 NA
946 286.11 humidity 50.0 90 > th dose independent rect. 24 12
959 286.14 atmosphere 995.0 90 > th dose independent rect. 12 12
968 286.16 radiation 40.0 720 < th dose independent rect. 2 7
986 286.21 humidity 90.0 90 < th dose dependent rect. 12 12
990 286.22 humidity 50.0 270 > th dose independent rect. 14 22