Os04g0562500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF241, plant family protein.
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Os04g0562500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF241, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 353.06 | 0.883 | 5.04 | 3.58 | 1.79 | -2.31 | -0.648 | -1.55 | 1.11 | 8.27 | 24.8 | 5115 | -- | -- |
| 355.25 | 0.878 | 5 | 3.97 | 1.78 | -2.32 | -0.678 | -- | 1.14 | 8.24 | 25.1 | 5188 | -- | -- |
| 354.33 | 0.877 | 5.03 | 3.59 | 1.79 | -2.31 | -- | -1.45 | 1.11 | 8.24 | 24.77 | 5106 | -- | -- |
| 356.09 | 0.879 | 4.99 | 3.96 | 1.82 | -2.31 | -- | -- | 1.15 | 8.16 | 25.51 | 5415 | -- | -- |
| 523.17 | 1.07 | 5.07 | 3.77 | -- | -2.64 | -- | -1.07 | 1.12 | -- | 26.2 | 5108 | -- | -- |
| 517.74 | 1.07 | 5.09 | 2.99 | 1.93 | -- | -0.478 | -- | 0.692 | 8.58 | -- | -- | -- | -- |
| 518.47 | 1.07 | 5.09 | 2.98 | 1.93 | -- | -- | -- | 0.692 | 8.56 | -- | -- | -- | -- |
| 522.79 | 1.06 | 5.04 | 4.07 | -- | -2.67 | -- | -- | 1.19 | -- | 26.12 | 5093 | -- | -- |
| 686.1 | 1.22 | 5.19 | -- | 1.87 | -1.75 | -- | -- | 0.303 | 8.31 | 29.2 | 3407 | -- | -- |
| 727.72 | 1.26 | 5.15 | 2.98 | -- | -- | -- | -- | 0.71 | -- | -- | -- | -- | -- |
| 751.95 | 1.28 | 5.17 | -- | 1.94 | -- | -- | -- | 0.36 | 8.45 | -- | -- | -- | -- |
| 821.77 | 1.34 | 5.2 | -- | -- | -2.02 | -- | -- | 0.488 | -- | 29.3 | 2089 | -- | -- |
| 962.49 | 1.45 | 5.22 | -- | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 358.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 3 | 358.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 30 | 359.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 39 | 360.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 42 | 360.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 54 | 360.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 22 |
| 56 | 360.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 57 | 360.47 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 104 | 361.15 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 116 | 361.26 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 118 | 361.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 136 | 361.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 149 | 361.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 150 | 361.66 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 151 | 361.66 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 153 | 361.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 155 | 361.69 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 190 | 361.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 192 | 362.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 199 | 362.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 200 | 362.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 205 | 362.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 258 | 362.59 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 263 | 362.62 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 268 | 362.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 284 | 362.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 299 | 362.90 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 332 | 363.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 15 |
| 381 | 363.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 20 |
| 410 | 363.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 415 | 363.81 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 448 | 363.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 495 | 364.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 673 | 364.59 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 683 | 364.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 742 | 364.74 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 859 | 365.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 916 | 365.20 | temperature | 25 | 4320 | > th | dose dependent | sin | 21 | NA |
| 938 | 365.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 939 | 365.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 940 | 365.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 13 |